Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1037.Seq
         (349 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0099 + 6768115-6768285,6769950-6770034,6770501-6770628,677...    28   2.3  
09_01_0087 + 1245890-1246565,1247409-1247484,1247774-1247893,124...    27   4.0  

>02_02_0099 +
           6768115-6768285,6769950-6770034,6770501-6770628,
           6771429-6771465,6773108-6774193,6774337-6774447,
           6774701-6774817,6774818-6775120,6776092-6776513,
           6776645-6777274
          Length = 1029

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -2

Query: 162 KGFSKILAGD--YDHLPEVAFYMVGPIEEVVAK 70
           KG  +++AG   + H     FYM+ P EEVV K
Sbjct: 163 KGTERLVAGAQLFGHSTRQPFYMIQPSEEVVQK 195


>09_01_0087 +
           1245890-1246565,1247409-1247484,1247774-1247893,
           1248927-1249002,1250767-1250835,1251019-1251099,
           1251298-1251369,1251600-1251692,1251904-1252083,
           1252558-1252641,1252729-1252872,1253089-1253178,
           1255982-1256064,1256140-1256421,1256722-1256959,
           1258307-1258957
          Length = 1004

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 319 TLLLFWVWTXCLKK 278
           +LLLFW W  CLK+
Sbjct: 277 SLLLFWYWEDCLKQ 290


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,217,805
Number of Sequences: 37544
Number of extensions: 110291
Number of successful extensions: 207
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)