Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1037.Seq
         (349 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)               110   3e-25
SB_39426| Best HMM Match : C4 (HMM E-Value=0)                          26   7.3  
SB_20978| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.7  
SB_13011| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.7  
SB_40159| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.7  
SB_26065| Best HMM Match : Peptidase_A17 (HMM E-Value=6.5e-19)         26   9.7  
SB_24095| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.7  

>SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)
          Length = 448

 Score =  110 bits (264), Expect = 3e-25
 Identities = 51/66 (77%), Positives = 57/66 (86%)
 Frame = -2

Query: 249 IQRFLSQPFQVAEVFTGHAGKLVPXEETIKGFSKILAGDYDHLPEVAFYMVGPIEEVVAK 70
           IQ+FLSQPF  AEVFTGH GKLVP +ETI GF+KIL G+ DHLPEVAFYM+GPIEE VAK
Sbjct: 380 IQKFLSQPFVTAEVFTGHDGKLVPLKETIVGFNKILKGELDHLPEVAFYMIGPIEEAVAK 439

Query: 69  ADTLAK 52
           AD LA+
Sbjct: 440 ADRLAE 445



 Score = 52.8 bits (121), Expect = 7e-08
 Identities = 26/31 (83%), Positives = 27/31 (87%)
 Frame = -3

Query: 347 ILQDXKSXQDIIAXLGMDEXSEEDKLTVARA 255
           ILQD KS QDIIA LGMDE SE+DKLTVARA
Sbjct: 347 ILQDYKSLQDIIAILGMDELSEDDKLTVARA 377


>SB_39426| Best HMM Match : C4 (HMM E-Value=0)
          Length = 188

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 161 LIVSSXGTSLPACPVNTSATWXG 229
           + V S  T+LP CP   S+ W G
Sbjct: 37  MAVHSQSTTLPTCPGGWSSLWSG 59


>SB_20978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1683

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -2

Query: 180  PXEETIKGFSKILAGDYDHLPEVAFYMV 97
            P EET +G  K LAG YD L   + Y+V
Sbjct: 1048 PAEETKRGVLKKLAGLYDPLGWASPYVV 1075


>SB_13011| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 571

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -2

Query: 180 PXEETIKGFSKILAGDYDHLPEVAFYMV 97
           P EET +G  K LAG YD L   + Y+V
Sbjct: 217 PAEETKRGVLKKLAGLYDPLGWASPYVV 244


>SB_40159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1497

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -2

Query: 180 PXEETIKGFSKILAGDYDHLPEVAFYMV 97
           P EET +G  K LAG YD L   + Y+V
Sbjct: 842 PAEETKRGVLKKLAGLYDPLGWASPYVV 869


>SB_26065| Best HMM Match : Peptidase_A17 (HMM E-Value=6.5e-19)
          Length = 317

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -2

Query: 180 PXEETIKGFSKILAGDYDHLPEVAFYMV 97
           P EET +G  K LAG YD L   + Y+V
Sbjct: 67  PAEETKRGVLKKLAGLYDPLGWASPYVV 94


>SB_24095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1162

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -2

Query: 180 PXEETIKGFSKILAGDYDHLPEVAFYMV 97
           P EET +G  K LAG YD L   + Y+V
Sbjct: 597 PAEETKRGVLKKLAGLYDPLGWASPYVV 624


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,408,827
Number of Sequences: 59808
Number of extensions: 123167
Number of successful extensions: 217
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 523129866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)