Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1037.Seq
         (349 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase su...   101   1e-22

>U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase
           subunit protein 2 protein.
          Length = 538

 Score =  101 bits (243), Expect = 1e-22
 Identities = 48/66 (72%), Positives = 54/66 (81%)
 Frame = -2

Query: 249 IQRFLSQPFQVAEVFTGHAGKLVPXEETIKGFSKILAGDYDHLPEVAFYMVGPIEEVVAK 70
           IQRFLSQPFQVAEVFTGH GK V  EETI+GF+ IL G+ DHLPEVAFYM G I++V  K
Sbjct: 469 IQRFLSQPFQVAEVFTGHQGKFVSLEETIRGFTMILKGELDHLPEVAFYMQGGIDDVFKK 528

Query: 69  ADTLAK 52
           A+ LAK
Sbjct: 529 AEELAK 534



 Score = 52.8 bits (121), Expect = 6e-08
 Identities = 26/31 (83%), Positives = 27/31 (87%)
 Frame = -3

Query: 347 ILQDXKSXQDIIAXLGMDEXSEEDKLTVARA 255
           ILQD KS QDIIA LGMDE SEEDKLTV+RA
Sbjct: 436 ILQDYKSLQDIIAILGMDELSEEDKLTVSRA 466


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,358,259
Number of Sequences: 27780
Number of extensions: 98037
Number of successful extensions: 160
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)