Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV1037.Seq
(349 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondria... 85 1e-17
At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,... 85 1e-17
At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondria... 85 1e-17
At3g11560.3 68416.m01412 expressed protein 28 2.0
At3g11560.2 68416.m01411 expressed protein 28 2.0
At3g11560.1 68416.m01410 expressed protein 28 2.0
At1g72440.1 68414.m08377 CCAAT-box-binding transcription factor-... 27 3.4
>At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondrial
identical to SP|P83484 ATP synthase beta chain 2,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452187|dbj|AK118582.1|
Length = 556
Score = 85.0 bits (201), Expect = 1e-17
Identities = 41/68 (60%), Positives = 49/68 (72%)
Frame = -2
Query: 249 IQRFLSQPFQVAEVFTGHAGKLVPXEETIKGFSKILAGDYDHLPEVAFYMVGPIEEVVAK 70
IQRFLSQPF VAE+FTG GK V +E I F +L G YD L E +FYMVG I+EVVAK
Sbjct: 487 IQRFLSQPFHVAEIFTGAPGKYVDLKENINSFQGLLDGKYDDLSEQSFYMVGGIDEVVAK 546
Query: 69 ADTLAKNA 46
A+ +AK +
Sbjct: 547 AEKIAKES 554
Score = 49.2 bits (112), Expect = 7e-07
Identities = 23/31 (74%), Positives = 27/31 (87%)
Frame = -3
Query: 347 ILQDXKSXQDIIAXLGMDEXSEEDKLTVARA 255
+LQ+ K+ QDIIA LGMDE SE+DKLTVARA
Sbjct: 454 VLQNYKNLQDIIAILGMDELSEDDKLTVARA 484
>At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,
putative strong similarity to SP|P83483 ATP synthase
beta chain 1, mitochondrial precursor (EC 3.6.3.14)
{Arabidopsis thaliana}, SP|P17614 ATP synthase beta
chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana
plumbaginifolia}; contains Pfam profiles PF00006: ATP
synthase alpha/beta family nucleotide-binding domain,
PF00306: ATP synthase ab C terminal, PF02874: ATP
synthase alpha/beta family beta-barrel domain
Length = 559
Score = 85.0 bits (201), Expect = 1e-17
Identities = 41/68 (60%), Positives = 49/68 (72%)
Frame = -2
Query: 249 IQRFLSQPFQVAEVFTGHAGKLVPXEETIKGFSKILAGDYDHLPEVAFYMVGPIEEVVAK 70
IQRFLSQPF VAE+FTG GK V +E I F +L G YD L E +FYMVG I+EVVAK
Sbjct: 490 IQRFLSQPFHVAEIFTGAPGKYVDLKENINSFQGLLDGKYDDLSEQSFYMVGGIDEVVAK 549
Query: 69 ADTLAKNA 46
A+ +AK +
Sbjct: 550 AEKIAKES 557
Score = 49.2 bits (112), Expect = 7e-07
Identities = 23/31 (74%), Positives = 27/31 (87%)
Frame = -3
Query: 347 ILQDXKSXQDIIAXLGMDEXSEEDKLTVARA 255
+LQ+ K+ QDIIA LGMDE SE+DKLTVARA
Sbjct: 457 VLQNYKNLQDIIAILGMDELSEDDKLTVARA 487
>At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondrial
identical to SP|P83483 ATP synthase beta chain 1,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452102|dbj|AK118538.1|
Length = 556
Score = 85.0 bits (201), Expect = 1e-17
Identities = 41/68 (60%), Positives = 49/68 (72%)
Frame = -2
Query: 249 IQRFLSQPFQVAEVFTGHAGKLVPXEETIKGFSKILAGDYDHLPEVAFYMVGPIEEVVAK 70
IQRFLSQPF VAE+FTG GK V +E I F +L G YD L E +FYMVG I+EVVAK
Sbjct: 487 IQRFLSQPFHVAEIFTGAPGKYVDLKENINSFQGLLDGKYDDLSEQSFYMVGGIDEVVAK 546
Query: 69 ADTLAKNA 46
A+ +AK +
Sbjct: 547 AEKIAKES 554
Score = 49.2 bits (112), Expect = 7e-07
Identities = 23/31 (74%), Positives = 27/31 (87%)
Frame = -3
Query: 347 ILQDXKSXQDIIAXLGMDEXSEEDKLTVARA 255
+LQ+ K+ QDIIA LGMDE SE+DKLTVARA
Sbjct: 454 VLQNYKNLQDIIAILGMDELSEDDKLTVARA 484
>At3g11560.3 68416.m01412 expressed protein
Length = 872
Score = 27.9 bits (59), Expect = 2.0
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 149 LENPLIVSSXGTSLPACPVNTSATWXGCERNL*IXLXVPLSTCL 280
L+ P +VSS TS P P + T+ C+R + + LS CL
Sbjct: 5 LQRPGLVSSSSTSKPCLPRMSIVTFISCKRTVHLEY---LSNCL 45
>At3g11560.2 68416.m01411 expressed protein
Length = 872
Score = 27.9 bits (59), Expect = 2.0
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 149 LENPLIVSSXGTSLPACPVNTSATWXGCERNL*IXLXVPLSTCL 280
L+ P +VSS TS P P + T+ C+R + + LS CL
Sbjct: 5 LQRPGLVSSSSTSKPCLPRMSIVTFISCKRTVHLEY---LSNCL 45
>At3g11560.1 68416.m01410 expressed protein
Length = 619
Score = 27.9 bits (59), Expect = 2.0
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 149 LENPLIVSSXGTSLPACPVNTSATWXGCERNL*IXLXVPLSTCL 280
L+ P +VSS TS P P + T+ C+R + + LS CL
Sbjct: 5 LQRPGLVSSSSTSKPCLPRMSIVTFISCKRTVHLEY---LSNCL 45
>At1g72440.1 68414.m08377 CCAAT-box-binding transcription
factor-related similar to CCAAT-box-binding
transcription factor (CCAAT-binding factor) (CBF)
(Swiss-Prot:Q03701) [Homo sapiens], GB:P53569 [Mus
musculus]
Length = 1056
Score = 27.1 bits (57), Expect = 3.4
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -1
Query: 319 TLLLFWVWTXCLKK 278
+LLLFW W CLK+
Sbjct: 303 SLLLFWYWEDCLKQ 316
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,963,675
Number of Sequences: 28952
Number of extensions: 91400
Number of successful extensions: 156
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 429398688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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