Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1035.Seq
         (299 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   2.9  
EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive pep...    20   5.0  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    20   6.6  
AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    19   8.7  

>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.0 bits (42), Expect = 2.9
 Identities = 6/19 (31%), Positives = 10/19 (52%)
 Frame = -2

Query: 268 VCACIVLLEXPVNDTLPSR 212
           +CAC V  +    +T P +
Sbjct: 13  ICACTVFAQQQAEETAPKK 31


>EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive
           peptide receptor 2 protein.
          Length = 354

 Score = 20.2 bits (40), Expect = 5.0
 Identities = 6/13 (46%), Positives = 7/13 (53%)
 Frame = +2

Query: 80  WIQFRLW*WKCII 118
           WI  + W WK  I
Sbjct: 195 WIDLQTWQWKVYI 207


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 19.8 bits (39), Expect = 6.6
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = -1

Query: 71  ATAGCTGSCQVCACISVTGT 12
           A+ G T     C C   TGT
Sbjct: 909 ASGGTTARVVRCVCAGSTGT 928


>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 19.4 bits (38), Expect = 8.7
 Identities = 7/28 (25%), Positives = 13/28 (46%)
 Frame = -3

Query: 153 LCLHQCYWNCRWMIHFHHHSRNCIHKCC 70
           LC    YW  ++   +H ++ + I   C
Sbjct: 115 LCYAVYYWRQQYEDFWHRYTLSFIENYC 142


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,020
Number of Sequences: 336
Number of extensions: 1399
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 48
effective length of database: 106,457
effective search space used:  5429307
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)