Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1035.Seq
         (299 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   0.59 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   0.78 
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb...    27   0.78 
SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po...    24   4.2  
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c...    23   9.6  
SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Ma...    23   9.6  
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom...    23   9.6  

>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 27.1 bits (57), Expect = 0.59
 Identities = 20/58 (34%), Positives = 24/58 (41%)
 Frame = +1

Query: 4    PPAVPVTLMQAQTWQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQAQTLQDPXHP 177
            PP  P   M A        PA+A+     P  V E YHPP    T  +   +Q P HP
Sbjct: 908  PPPPPTASMTASA------PAIAS---PPPPKVGETYHPPTASGT--RVPPVQQPSHP 954


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 0.78
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 61   PAVAALMDTVPTVVMEVYHPPAVPVTLMQAQTLQDP 168
            PAV+A + T P VV  V HP   P   +    ++DP
Sbjct: 1293 PAVSASISTPPAVVPTVQHPQ--PTKQIPTAAVKDP 1326


>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 955

 Score = 26.6 bits (56), Expect = 0.78
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = +1

Query: 22  TLMQAQTWQDPVHPAVAALMDTVP--TVVMEVYHPPAVPVTLMQAQTLQDPXHPAVAALM 195
           +++ AQ   +P    + AL D +   T+ + + HPP+    L     L     P ++  +
Sbjct: 602 SILLAQVKLNPTQAELEALADNIDIVTIFLSLVHPPSPAGELHPIVRLFQDIWPILSRTL 661

Query: 196 DTVPXVVM 219
           DT   V++
Sbjct: 662 DTFSDVLI 669


>SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 160 QDPXHPAVAALMDTVPXVVMEVYHSPAVPV 249
           Q   HPAV+A   T P   +EVY    + V
Sbjct: 250 QTSHHPAVSAFYVTCPSKGIEVYGQDQIAV 279



 Score = 23.8 bits (49), Expect = 5.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 58  HPAVAALMDTVPTVVMEVYHPPAVPV 135
           HPAV+A   T P+  +EVY    + V
Sbjct: 254 HPAVSAFYVTCPSKGIEVYGQDQIAV 279


>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 585

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +1

Query: 85  TVPTVVMEVYHPPAVPVTLMQAQTLQDPXHPA 180
           +V T  +E Y     P T++ +QT+    HP+
Sbjct: 279 SVSTNTLENYELQVRPSTILASQTIFSEEHPS 310


>SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 222 FHHDXRNCIH 193
           F+HD  NCIH
Sbjct: 263 FYHDDTNCIH 272


>SPAC25H1.08c |||ribosome biogenesis protein
           Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 399

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 71  ATAGCTGSCQVCACISVTGT 12
           A A CT +  +CAC SV GT
Sbjct: 290 AIALCT-ALPICACASVDGT 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 998,242
Number of Sequences: 5004
Number of extensions: 16716
Number of successful extensions: 44
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)