Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV1035.Seq
(299 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0389 - 2915191-2915604,2915696-2915752,2915867-2915922,291... 29 0.89
06_03_1490 + 30497980-30498102,30499034-30500156,30500914-305011... 29 0.89
04_04_0189 + 23438794-23439053,23439178-23439400,23439947-23440819 28 1.6
01_06_0829 - 32270189-32270863 27 2.1
09_06_0354 - 22490833-22491417 27 2.7
07_03_1121 - 24130451-24130462,24130827-24131255 27 3.6
01_01_0071 + 548255-548399,548478-548651,548787-548892,548992-54... 27 3.6
12_01_0220 - 1657554-1657620,1657943-1658109,1658110-1658267,165... 26 4.7
10_08_0630 - 19410852-19411235,19411370-19412257,19412440-194129... 26 6.3
03_06_0572 + 34812203-34812278,34812485-34813768,34813973-348140... 26 6.3
02_05_0322 - 27926619-27927686 26 6.3
08_02_0151 - 13287964-13288661,13289616-13289812,13290005-132905... 25 8.3
>07_01_0389 -
2915191-2915604,2915696-2915752,2915867-2915922,
2916053-2916113,2916243-2916365,2916505-2916537,
2916617-2916709,2916839-2916934,2917025-2917203,
2917344-2917530,2918051-2918184,2918311-2918518,
2918598-2918633,2918785-2919241,2919633-2919736,
2920489-2920569,2920646-2920697,2920837-2920876,
2920991-2921085,2921241-2921383,2921899-2922006,
2922120-2922221,2922302-2922348,2922425-2922554,
2923173-2923304,2923404-2923616,2923709-2923963,
2924053-2924799
Length = 1460
Score = 28.7 bits (61), Expect = 0.89
Identities = 20/62 (32%), Positives = 29/62 (46%)
Frame = +1
Query: 55 VHPAVAALMDTVPTVVMEVYHPPAVPVTLMQAQTLQDPXHPAVAALMDTVPXVVMEVYHS 234
V A A L + T+++ ++ PPA+P L A L A AAL D + + S
Sbjct: 43 VDDAAALLAEAGCTLLVPLHQPPALPSPLSFAPRLARALAAADAALRDRLLAGLAAFAES 102
Query: 235 PA 240
PA
Sbjct: 103 PA 104
>06_03_1490 + 30497980-30498102,30499034-30500156,30500914-30501132,
30501228-30501454,30501810-30501884,30502250-30502321,
30502765-30502863,30502975-30503046,30503131-30503245,
30503455-30503523,30503625-30503952,30504320-30504437,
30504522-30505448
Length = 1188
Score = 28.7 bits (61), Expect = 0.89
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Frame = +1
Query: 10 AVPVTLMQAQT--WQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQAQTLQD-PXHPA 180
+VP T MQ + P P +L D+VP+ M+ +VP T MQ P P
Sbjct: 948 SVPSTPMQKSVFDYSVPSTPLQKSLFDSVPSTPMQKSVFDSVPSTPMQNSLFDSFPSTPM 1007
Query: 181 VAALMDTVP 207
+L D+ P
Sbjct: 1008 QRSLFDSGP 1016
>04_04_0189 + 23438794-23439053,23439178-23439400,23439947-23440819
Length = 451
Score = 27.9 bits (59), Expect = 1.6
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +1
Query: 4 PPAVPVTLMQAQTWQDPVHPAVAALMDTVPTVVME--VYHPPA 126
P VTL P+ P+ AA DT+P + +HPPA
Sbjct: 22 PSNTTVTLPPLTLRDVPLLPSAAAATDTIPNPISRHPYFHPPA 64
>01_06_0829 - 32270189-32270863
Length = 224
Score = 27.5 bits (58), Expect = 2.1
Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Frame = -3
Query: 153 LCLHQCYWNCRW-MIHFHHHSRNC 85
LC H W C + +H H HSR C
Sbjct: 41 LCGHLFCWPCLYEWLHVHAHSREC 64
>09_06_0354 - 22490833-22491417
Length = 194
Score = 27.1 bits (57), Expect = 2.7
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = +1
Query: 19 VTLMQAQTWQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQAQTLQDPXHPAVAA 189
V + T + + P V +D T PP VP+ Q+Q QDP P AA
Sbjct: 28 VVQLTTTTAELELEPTVTVQVDDNKTGAAADETPPVVPL---QSQETQDPNEPKAAA 81
>07_03_1121 - 24130451-24130462,24130827-24131255
Length = 146
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = -3
Query: 204 NCIHKCCYRRMXWILQGLCLHQCYW-NCRWMIHFHHHSRNCIHKC 73
NC C + W+ G C H+C C + F R C H C
Sbjct: 29 NCC-AVCVEPLEWVAIGPCGHRCVCARCIVQVRFVSEDRRC-HVC 71
>01_01_0071 +
548255-548399,548478-548651,548787-548892,548992-549130,
549216-549293,549395-549460,550061-550201,550417-550527,
550614-550655,550739-550825,551033-551118,551681-551684
Length = 392
Score = 26.6 bits (56), Expect = 3.6
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Frame = +1
Query: 25 LMQAQTWQDPVHPAV--AALMDTVPTVVMEVYHPPAVPVTLMQAQTLQDPXHPAVAA 189
++ A Q P A A L DTVP + + ++ AQT+Q H V A
Sbjct: 69 VLSANLGQAPARQAALGAGLPDTVPCTTVNKVCSSGMKAVMLAAQTIQLGMHDVVVA 125
>12_01_0220 -
1657554-1657620,1657943-1658109,1658110-1658267,
1658362-1658447,1658559-1658808,1659194-1660320,
1662207-1662351,1663555-1663696,1663775-1663828,
1663914-1663985,1664710-1664778,1664885-1664926,
1665024-1665092,1665257-1665394,1665518-1665628,
1665704-1665836,1666834-1666889,1667191-1667901
Length = 1198
Score = 26.2 bits (55), Expect = 4.7
Identities = 14/53 (26%), Positives = 24/53 (45%)
Frame = +1
Query: 1 HPPAVPVTLMQAQTWQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQAQTL 159
H P P+ L+ + + P+ + +L V+++YH V L A TL
Sbjct: 581 HSPPSPILLLLVEGVRVPLPRTIRSLALVAMITVVDLYHVLTAVVPLYVAMTL 633
>10_08_0630 -
19410852-19411235,19411370-19412257,19412440-19412941,
19413662-19414135,19414982-19415040,19415468-19415629
Length = 822
Score = 25.8 bits (54), Expect = 6.3
Identities = 16/64 (25%), Positives = 23/64 (35%)
Frame = +1
Query: 61 PAVAALMDTVPTVVMEVYHPPAVPVTLMQAQTLQDPXHPAVAALMDTVPXVVMEVYHSPA 240
PA+ + P+ + PP+ P + P PA AA + P PA
Sbjct: 415 PAITVMPPPAPSQQPQPPPPPSHPTPITSVAPAPPPPPPAAAAAAASQPSPQATKSPLPA 474
Query: 241 VPVT 252
P T
Sbjct: 475 TPQT 478
>03_06_0572 +
34812203-34812278,34812485-34813768,34813973-34814049,
34814299-34814646
Length = 594
Score = 25.8 bits (54), Expect = 6.3
Identities = 23/92 (25%), Positives = 33/92 (35%), Gaps = 8/92 (8%)
Frame = +1
Query: 4 PPAVPVTLMQAQTWQDPVHPAVAALMDTVPTV------VMEVYHPPAVPVTLMQAQTLQD 165
P PVT+ +PV P + + T P + +P PVT+ T
Sbjct: 254 PATNPVTVPATNPAMNPVTPGIVTVPSTNPATGYSNNPNLPPLYPEPTPVTMPDPTTTTT 313
Query: 166 PXHPAVAALMDTVPXVVMEVYHSPAV--PVTL 255
P T+P V +PAV P T+
Sbjct: 314 PTPFMNPVTAPTMPSPVTNPATTPAVTNPTTM 345
>02_05_0322 - 27926619-27927686
Length = 355
Score = 25.8 bits (54), Expect = 6.3
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +1
Query: 112 YHPPAVPVTLMQAQTLQDPXHPAVAALMDTVPXVVMEVYHSPAVPVT-LCXHRPC 273
Y P L++ + H LMD+ VV+++ +P VPV L HR C
Sbjct: 224 YESPRPDTPLLRLAWNRYDFHYMATLLMDSSAVVVLDM-RAPGVPVAELHRHRAC 277
>08_02_0151 -
13287964-13288661,13289616-13289812,13290005-13290523,
13290912-13291114
Length = 538
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 55 VHPAVAALMDTVPTVVMEVYHPP 123
V P VAAL T+PT + V PP
Sbjct: 21 VRPRVAALQKTLPTEKLAVPAPP 43
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,522,548
Number of Sequences: 37544
Number of extensions: 135397
Number of successful extensions: 353
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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