Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV1035.Seq
(299 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK055979-1|BAB71063.1| 710|Homo sapiens protein ( Homo sapiens ... 31 0.50
AJ295938-1|CAC16891.1| 260|Homo sapiens synaptobrevin like prot... 31 0.88
AK128694-1|BAC87575.1| 291|Homo sapiens protein ( Homo sapiens ... 29 2.0
AF386649-1|AAL26987.1| 1362|Homo sapiens bromodomain-containing ... 29 3.5
BC030023-1|AAH30023.1| 440|Homo sapiens glycosyltransferase 8 d... 28 6.2
BC013974-1|AAH13974.1| 370|Homo sapiens SDC3 protein protein. 28 6.2
AL445235-6|CAI22250.1| 442|Homo sapiens syndecan 3 protein. 28 6.2
AL445235-1|CAI22245.1| 384|Homo sapiens syndecan 3 protein. 28 6.2
AF248634-1|AAK39969.1| 442|Homo sapiens syndecan 3 protein. 28 6.2
AB037780-1|BAA92597.1| 517|Homo sapiens KIAA1359 protein protein. 28 6.2
AB007937-1|BAA32313.2| 410|Homo sapiens KIAA0468 protein protein. 28 6.2
AJ406938-1|CAC27577.1| 109|Homo sapiens keratin associated prot... 27 8.2
>AK055979-1|BAB71063.1| 710|Homo sapiens protein ( Homo sapiens
cDNA FLJ31417 fis, clone NT2NE2000327, weakly similar to
GLUCOAMYLASE S1/S2 PRECURSOR (EC 3.2.1.3). ).
Length = 710
Score = 31.5 bits (68), Expect = 0.50
Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 8/97 (8%)
Frame = +1
Query: 4 PPAVPVTLMQAQTWQDPVHPAVAA-LMDTVPTVVMEVYHPPAVPVTLMQAQTLQD----- 165
PPAV T+ + Q PV AA D+ + + HPP+ +++ + +D
Sbjct: 260 PPAVVATVSATRA-QSPVITTTAAHATDSALRPTLSIQHPPSAAISIQRPAQSRDVTTRI 318
Query: 166 --PXHPAVAALMDTVPXVVMEVYHSPAVPVTLCXHRP 270
P HPA+ + + + S PV P
Sbjct: 319 TLPSHPALGTPKQQLHTMAQKTIFSTGTPVAAATVAP 355
>AJ295938-1|CAC16891.1| 260|Homo sapiens synaptobrevin like protein
1B protein.
Length = 260
Score = 30.7 bits (66), Expect = 0.88
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = -3
Query: 111 HFHHHSRNCIHKC-CYRRMYWI-LPGLC 34
++HHH NC+H C+ ++WI + LC
Sbjct: 168 YYHHHRINCVHLYHCFTSLWWIYMAKLC 195
>AK128694-1|BAC87575.1| 291|Homo sapiens protein ( Homo sapiens
cDNA FLJ46861 fis, clone UTERU3011092. ).
Length = 291
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Frame = -3
Query: 150 CLHQCYWNCRWMIHFHHHSRNCIHKCCYRRMY-----WILPGLCLHQCYWN 13
C+H C M H H CIH+C + Y +I +C+H C ++
Sbjct: 173 CVHMCIHKYTCM-HMCIHMYTCIHRCIFIYTYVYICVYIHIYICIHVCVYS 222
>AF386649-1|AAL26987.1| 1362|Homo sapiens bromodomain-containing 4
protein.
Length = 1362
Score = 28.7 bits (61), Expect = 3.5
Identities = 20/49 (40%), Positives = 25/49 (51%)
Frame = +1
Query: 7 PAVPVTLMQAQTWQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQAQ 153
PA P + A T Q P+ P M P V++E PPA P+T MQ Q
Sbjct: 884 PARPPAVSPALT-QTPLLPQPP--MAQPPQVLLEDEEPPAPPLTSMQMQ 929
>BC030023-1|AAH30023.1| 440|Homo sapiens glycosyltransferase 8
domain containing 3 protein.
Length = 440
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = -3
Query: 138 CYWNCRWMIHFHHHSRNCIHKCCYRRMYWILPGLCLH 28
CYWN WM+ NC + +R I P +H
Sbjct: 81 CYWNPYWMLPSDVCGMNCFWEAAFRYSLKIQPVEKMH 117
>BC013974-1|AAH13974.1| 370|Homo sapiens SDC3 protein protein.
Length = 370
Score = 27.9 bits (59), Expect = 6.2
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Frame = +1
Query: 7 PAVPVTLMQAQTWQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQAQTLQDPXHPAVA 186
P V +A T + P P AA++DT V + P L + T Q+P P +
Sbjct: 143 PLTTVATARATTPEAPSPPTTAAVLDTEAPTPRLVSTATSRPRALPRPATTQEPDIPERS 202
Query: 187 AL-MDTVPXVVMEVYHSP 237
L + T EV +P
Sbjct: 203 TLPLGTTAPGPTEVAQTP 220
>AL445235-6|CAI22250.1| 442|Homo sapiens syndecan 3 protein.
Length = 442
Score = 27.9 bits (59), Expect = 6.2
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Frame = +1
Query: 7 PAVPVTLMQAQTWQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQAQTLQDPXHPAVA 186
P V +A T + P P AA++DT V + P L + T Q+P P +
Sbjct: 215 PLTTVATARATTPEAPSPPTTAAVLDTEAPTPRLVSTATSRPRALPRPATTQEPDIPERS 274
Query: 187 AL-MDTVPXVVMEVYHSP 237
L + T EV +P
Sbjct: 275 TLPLGTTAPGPTEVAQTP 292
>AL445235-1|CAI22245.1| 384|Homo sapiens syndecan 3 protein.
Length = 384
Score = 27.9 bits (59), Expect = 6.2
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Frame = +1
Query: 7 PAVPVTLMQAQTWQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQAQTLQDPXHPAVA 186
P V +A T + P P AA++DT V + P L + T Q+P P +
Sbjct: 157 PLTTVATARATTPEAPSPPTTAAVLDTEAPTPRLVSTATSRPRALPRPATTQEPDIPERS 216
Query: 187 AL-MDTVPXVVMEVYHSP 237
L + T EV +P
Sbjct: 217 TLPLGTTAPGPTEVAQTP 234
>AF248634-1|AAK39969.1| 442|Homo sapiens syndecan 3 protein.
Length = 442
Score = 27.9 bits (59), Expect = 6.2
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Frame = +1
Query: 7 PAVPVTLMQAQTWQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQAQTLQDPXHPAVA 186
P V +A T + P P AA++DT V + P L + T Q+P P +
Sbjct: 215 PLTTVATARATTPEAPSPPTTAAVLDTEAPTPRLVSTATSRPRALPRPATTQEPDIPERS 274
Query: 187 AL-MDTVPXVVMEVYHSP 237
L + T EV +P
Sbjct: 275 TLPLGTTAPGPTEVAQTP 292
>AB037780-1|BAA92597.1| 517|Homo sapiens KIAA1359 protein protein.
Length = 517
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/61 (19%), Positives = 22/61 (36%)
Frame = +1
Query: 1 HPPAVPVTLMQAQTWQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQAQTLQDPXHPA 180
HP P ++ D +HP + + + + HP P ++ D HP
Sbjct: 193 HPVITPSRASESSASSDGLHPVITPSRASESSASSDGPHPVITPSRASESSASSDGPHPV 252
Query: 181 V 183
+
Sbjct: 253 I 253
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/61 (19%), Positives = 21/61 (34%)
Frame = +1
Query: 1 HPPAVPVTLMQAQTWQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQAQTLQDPXHPA 180
HP P ++ D HP + + + + HP P ++ D HP
Sbjct: 174 HPVITPSRASESSASSDGPHPVITPSRASESSASSDGLHPVITPSRASESSASSDGPHPV 233
Query: 181 V 183
+
Sbjct: 234 I 234
>AB007937-1|BAA32313.2| 410|Homo sapiens KIAA0468 protein protein.
Length = 410
Score = 27.9 bits (59), Expect = 6.2
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Frame = +1
Query: 7 PAVPVTLMQAQTWQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQAQTLQDPXHPAVA 186
P V +A T + P P AA++DT V + P L + T Q+P P +
Sbjct: 183 PLTTVATARATTPEAPSPPTTAAVLDTEAPTPRLVSTATSRPRALPRPATTQEPDIPERS 242
Query: 187 AL-MDTVPXVVMEVYHSP 237
L + T EV +P
Sbjct: 243 TLPLGTTAPGPTEVAQTP 260
>AJ406938-1|CAC27577.1| 109|Homo sapiens keratin associated protein
4.6 protein.
Length = 109
Score = 27.5 bits (58), Expect = 8.2
Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Frame = +1
Query: 4 PPAVPVTLMQAQTWQDPVHPAVAALMDTVPTV--VMEVYHPPAVPVTLMQAQTLQDPXHP 177
P AVP A V+PA AA P V V PA P+ + AQ + P P
Sbjct: 38 PAAVPAAASPAAAAPLAVNPAAAARAAAAPAAACVQSVAESPATPLAI--AQPVSFPPAP 95
Query: 178 AVAAL 192
A+
Sbjct: 96 VPCAV 100
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,156,548
Number of Sequences: 237096
Number of extensions: 739948
Number of successful extensions: 1650
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1644
length of database: 76,859,062
effective HSP length: 76
effective length of database: 58,839,766
effective search space used: 1353314618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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