Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV1035.Seq
(299 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY263366-1|AAO92605.1| 139|Apis mellifera octopamine receptor p... 23 0.81
AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor p... 23 0.81
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 20 7.6
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 20 7.6
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 20 7.6
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 20 7.6
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 20 7.6
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 20 7.6
AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor ... 20 7.6
AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein. 20 7.6
>AY263366-1|AAO92605.1| 139|Apis mellifera octopamine receptor
protein.
Length = 139
Score = 23.0 bits (47), Expect = 0.81
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Frame = -3
Query: 207 RNCIHKCCYRRMXWILQGLC---LHQCYWNCRWMIHFHHHSRNCIHKC-CYRR 61
RNCIH + + W+ G C ++ C + + F ++ I KC C RR
Sbjct: 36 RNCIHPTVFSVLFWL--GYCNSAINPCIY-ALFSKDFRFAFKSIICKCFCKRR 85
Score = 23.0 bits (47), Expect = 0.81
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -3
Query: 93 RNCIHKCCYRRMYWILPGLC 34
RNCIH + ++W+ G C
Sbjct: 36 RNCIHPTVFSVLFWL--GYC 53
>AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor
protein.
Length = 587
Score = 23.0 bits (47), Expect = 0.81
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Frame = -3
Query: 207 RNCIHKCCYRRMXWILQGLC---LHQCYWNCRWMIHFHHHSRNCIHKC-CYRR 61
RNCIH + + W+ G C ++ C + + F ++ I KC C RR
Sbjct: 484 RNCIHPTVFSVLFWL--GYCNSAINPCIY-ALFSKDFRFAFKSIICKCFCKRR 533
Score = 23.0 bits (47), Expect = 0.81
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -3
Query: 93 RNCIHKCCYRRMYWILPGLC 34
RNCIH + ++W+ G C
Sbjct: 484 RNCIHPTVFSVLFWL--GYC 501
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 19.8 bits (39), Expect = 7.6
Identities = 5/9 (55%), Positives = 7/9 (77%)
Frame = -3
Query: 72 CYRRMYWIL 46
C+ MYWI+
Sbjct: 418 CFNLMYWII 426
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 19.8 bits (39), Expect = 7.6
Identities = 5/9 (55%), Positives = 7/9 (77%)
Frame = -3
Query: 72 CYRRMYWIL 46
C+ MYWI+
Sbjct: 418 CFNLMYWII 426
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 19.8 bits (39), Expect = 7.6
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = -3
Query: 84 IHKCCYRRMYWILPGLCL 31
IH C R YW L L L
Sbjct: 81 IHPCSSFRFYWDLCMLLL 98
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 19.8 bits (39), Expect = 7.6
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = -3
Query: 84 IHKCCYRRMYWILPGLCL 31
IH C R YW L L L
Sbjct: 81 IHPCSSFRFYWDLCMLLL 98
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 19.8 bits (39), Expect = 7.6
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = -3
Query: 84 IHKCCYRRMYWILPGLCL 31
IH C R YW L L L
Sbjct: 81 IHPCSSFRFYWDLCMLLL 98
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 19.8 bits (39), Expect = 7.6
Identities = 5/9 (55%), Positives = 7/9 (77%)
Frame = -3
Query: 72 CYRRMYWIL 46
C+ MYWI+
Sbjct: 356 CFNLMYWII 364
>AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor A
isoform protein.
Length = 567
Score = 19.8 bits (39), Expect = 7.6
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +1
Query: 4 PPAVPVTLMQAQTWQDPVHPAVAA 75
PP+VPV A T + P +AA
Sbjct: 54 PPSVPVGSAVAGTAGGALFPGMAA 77
Score = 19.8 bits (39), Expect = 7.6
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +1
Query: 118 PPAVPVTLMQAQTLQDPXHPAVAA 189
PP+VPV A T P +AA
Sbjct: 54 PPSVPVGSAVAGTAGGALFPGMAA 77
>AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein.
Length = 554
Score = 19.8 bits (39), Expect = 7.6
Identities = 6/17 (35%), Positives = 8/17 (47%)
Frame = -3
Query: 111 HFHHHSRNCIHKCCYRR 61
H HHH + YR+
Sbjct: 352 HHHHHQTQSLQHLHYRQ 368
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,578
Number of Sequences: 438
Number of extensions: 1560
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used: 6244050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)
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