Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1034.Seq
         (528 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1022 + 7992901-7994676                                           30   1.3  
12_01_0962 - 9579051-9579707,9579804-9580706                           28   4.0  
04_01_0099 + 1029785-1030039,1030269-1030357,1030484-1030541,103...    28   4.0  
11_06_0344 + 22540436-22540737,22541304-22543545                       28   5.3  

>06_01_1022 + 7992901-7994676
          Length = 591

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +1

Query: 1   RLKKNLRNIKRLENVYVKFLCILIKRF*LFTCSYMYVSFNYRI 129
           R++K++R    L    +K LC+ +       C Y++++FNY+I
Sbjct: 156 RVEKDIR-FNYLWTRLIKLLCVTLFALHFAACIYLWMAFNYKI 197


>12_01_0962 - 9579051-9579707,9579804-9580706
          Length = 519

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -1

Query: 357 MASSLQLYDLVLPAFYDVTFITRARARGI--AKLPYSRPFWP 238
           MAS++ L  LVL A Y +  + R+R+      +LP S P WP
Sbjct: 1   MASTMSLALLVLSAAYVLVALRRSRSSSSKPRRLPPSPPGWP 42


>04_01_0099 +
           1029785-1030039,1030269-1030357,1030484-1030541,
           1030643-1030960,1031043-1031165,1031698-1031901,
           1031982-1032041
          Length = 368

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +1

Query: 1   RLKKNLRNIKRLENVYVKFLCILIKRF*LFTCSYMYVSFNYRI 129
           R++K++R    L    +K LC+ +       C Y+++ FNY+I
Sbjct: 115 RVEKDVR-FSYLWTRLIKLLCVTLFALHFAACIYLWMVFNYKI 156


>11_06_0344 + 22540436-22540737,22541304-22543545
          Length = 847

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 490 SSKXLSIVTTGWPRPSNRKRIT 425
           S +  S V  GWPRP+N  R++
Sbjct: 165 SERLFSAVAHGWPRPANSGRVS 186


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,720,018
Number of Sequences: 37544
Number of extensions: 213596
Number of successful extensions: 360
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)