Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1034.Seq
         (528 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   2.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.5  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   5.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   5.9  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   7.8  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    21   7.8  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    21   7.8  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    21   7.8  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    21   7.8  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 333 RKVEDSKPLKPREEMKP 383
           RKV  +KP KP+ + KP
Sbjct: 243 RKVHATKPPKPQTKTKP 259


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 448 PSNRKRITCFTAEIGIISCQPLGFIS 371
           P+ R    C+T +  II   P+G +S
Sbjct: 204 PTERLEALCWTQDEDIICSTPIGNLS 229


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -2

Query: 449 PFEPKTHYXLHGRNRHNFLSA 387
           PFE + H  L GRN  N L A
Sbjct: 104 PFEKRLHSRLPGRN-FNLLRA 123


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -3

Query: 448 PSNRKRITCFTAEIGIISCQPLGFIS 371
           P+ R    C+T +  +I   P+G +S
Sbjct: 151 PTERLEALCWTQDEDVICSTPIGNLS 176


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 333 RKVEDSKPLKPREEMK 380
           R  E SKPL  REE+K
Sbjct: 165 RTGEGSKPLFEREEIK 180


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 333 RKVEDSKPLKPREEMK 380
           R  E SKPL  REE+K
Sbjct: 154 RTGEGSKPLFEREEIK 169


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 333 RKVEDSKPLKPREEMK 380
           R  E SKPL  REE+K
Sbjct: 165 RTGEGSKPLFEREEIK 180


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 333 RKVEDSKPLKPREEMK 380
           R  E SKPL  REE+K
Sbjct: 165 RTGEGSKPLFEREEIK 180


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 333 RKVEDSKPLKPREEMK 380
           R  E SKPL  REE+K
Sbjct: 154 RTGEGSKPLFEREEIK 169


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,585
Number of Sequences: 438
Number of extensions: 2972
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)