Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1033.Seq
         (548 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   5.4  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   9.4  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   9.4  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   9.4  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 302 FKVLYIAVRATHRNXP*RNAKLSL 373
           + VL    R TH N P R AKL L
Sbjct: 343 YGVLEEYTRTTHPNEPGRFAKLLL 366


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 103 IDIYIHIEGSKIT 141
           ID+  HIEG+++T
Sbjct: 186 IDVENHIEGNEVT 198


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 103 IDIYIHIEGSKIT 141
           ID+  HIEG+++T
Sbjct: 186 IDVENHIEGNEVT 198


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 502 NSLSRSHVRSFNCVSRTPFFGASYL 428
           NS+S   + S NC  +   FG+S L
Sbjct: 30  NSMSCVSMPSMNCSPQGASFGSSML 54


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,161
Number of Sequences: 336
Number of extensions: 1976
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13516233
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)