Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1032.Seq
         (399 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    25   0.36 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   0.64 
DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory pro...    22   1.9  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   4.5  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   4.5  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    20   7.8  

>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 24.6 bits (51), Expect = 0.36
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +3

Query: 147 LVQICXMAQVYPHPASEGCTSASSESAPSDQPIYP 251
           L  +  +  VYP+     C   + E++ SD P +P
Sbjct: 182 LETLSQLMDVYPNNDGTKCLVVTDEASISDAPFFP 216


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.8 bits (49), Expect = 0.64
 Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = +3

Query: 186  PASEGC-TSASSESAPSDQPIYPDLDKTT 269
            P +  C   ASS  APS  P+ PD   TT
Sbjct: 2279 PENTECHPDASSTMAPSTTPMVPDKPVTT 2307


>DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory
           protein 7 protein.
          Length = 127

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 9/46 (19%), Positives = 21/46 (45%)
 Frame = +3

Query: 165 MAQVYPHPASEGCTSASSESAPSDQPIYPDLDKTTAKGLFKILEKY 302
           + +  P   S GCT  + +   + + +   L +  A+   ++ +KY
Sbjct: 62  LKKTLPDALSSGCTKCNQKQKETAEKVIRHLTQKRARDWERLSKKY 107


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 174 LGPSYKSGQVTSWLNALTNSKVLWPLLE 91
           +  + K G   + + A  +S V+WPL+E
Sbjct: 211 INENLKMGLDIASITAQASSFVVWPLVE 238


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 174 LGPSYKSGQVTSWLNALTNSKVLWPLLE 91
           +  + K G   + + A  +S V+WPL+E
Sbjct: 211 INENLKMGLDIASITAQASSFVVWPLVE 238


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 201 CTSASSESAPSDQPIYPDLDKTT 269
           CTS+  ++      +Y D+DK T
Sbjct: 65  CTSSGLQAIRCPAGLYFDIDKQT 87


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,898
Number of Sequences: 336
Number of extensions: 1446
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8541369
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)