Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1032.Seq
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    87   7e-19
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    27   1.4  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   2.5  
SPCC11E10.04 |||mitochondrial ATPase expression protein homolog|...    24   7.6  
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...    24   7.6  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    24   7.6  
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    24   10.0 
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    24   10.0 

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 87.4 bits (207), Expect = 7e-19
 Identities = 38/58 (65%), Positives = 46/58 (79%)
 Frame = +1

Query: 82  NPLFEKRPKNFAIGQGIQPTRDLSRFVXWPKYIRIQRQKAVLQRRLKVPPPINQFTQT 255
           NPLF  RP++F IGQ IQP RDLSRFV WP+YIR+QR++ +L  RLKVPP I QF +T
Sbjct: 24  NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKT 81



 Score = 24.6 bits (51), Expect = 5.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 255 LDKTTAKGLFKILEKY 302
           LDK TA  +FK+L KY
Sbjct: 82  LDKNTATQVFKLLNKY 97


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +3

Query: 117 YWSGHSANS*LVQICXMAQVYPHPASEGCTSASSESAPSDQPIYPDLDKTTA 272
           Y+  +  N  + Q+   A  YP+ +S    SAS  S+P+     P   +T +
Sbjct: 296 YFKENGLNYDIDQLISKAPSYPYSSSRPSASASLASSPTRSAFRPKTSETVS 347


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 195  EGCTSASSESAPSDQPIYPDLDKTTAKGLFK 287
            +  +S+S ES+ SD+   PDL + +  G+F+
Sbjct: 1816 QSLSSSSEESSDSDREEPPDLYRNSVLGIFQ 1846


>SPCC11E10.04 |||mitochondrial ATPase expression protein
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 443

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 261 CPGLGKLVDRRGHFQTTLKYSLLTLDADILG 169
           CP  GK +  R     +L+  L+  DAD LG
Sbjct: 96  CPKNGKNIRHRDRDLVSLQIKLILQDADRLG 126


>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 9/12 (75%), Positives = 12/12 (100%)
 Frame = +3

Query: 267 TAKGLFKILEKY 302
           TA+GL+K+LEKY
Sbjct: 94  TAQGLYKMLEKY 105


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1369

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 133 QPTRDLSR-FVXWPKYIRIQRQKAVLQRRLKVPPP 234
           QP RD +R FV    Y+ IQ +K   +  L +PPP
Sbjct: 737 QPARDAARHFVQRWNYL-IQCKKPARKTPLLIPPP 770


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 69  QENCESSLREEAKELCYWSGHSANS 143
           Q+N ++S++E+A E    S HS +S
Sbjct: 97  QQNSKNSIKEDANEHSVNSAHSKSS 121


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -1

Query: 171 GPSYKSGQVTSWLNALTNSKVLWPLLEERIHNFLGLNLFDHQ 46
           GP Y S Q     ++LTNS V    ++ER HN  G +    Q
Sbjct: 331 GPLYHSPQ-----SSLTNSSVASADVQERTHNTNGASPIQDQ 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,354,935
Number of Sequences: 5004
Number of extensions: 23827
Number of successful extensions: 85
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)