Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV1032.Seq
(399 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 91 3e-19
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 91 3e-19
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 91 3e-19
05_03_0573 - 15635338-15635502,15637573-15637632,15637776-15638033 28 2.4
10_08_0178 - 15475614-15475850,15476716-15476808 28 3.1
07_03_1414 - 26403361-26403969 28 3.1
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198... 28 3.1
07_03_0935 - 22738221-22738328,22739207-22739237,22739901-227400... 27 4.1
06_01_0820 + 6202348-6203313 27 4.1
06_01_0821 + 6210368-6211285 27 5.5
07_03_1422 + 26462871-26463434,26463772-26463897 27 7.2
07_03_1413 - 26396426-26396890 27 7.2
08_02_0294 - 15432424-15432669,15433007-15433099,15433168-154332... 26 9.5
02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-28... 26 9.5
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 91.1 bits (216), Expect = 3e-19
Identities = 38/58 (65%), Positives = 47/58 (81%)
Frame = +1
Query: 82 NPLFEKRPKNFAIGQGIQPTRDLSRFVXWPKYIRIQRQKAVLQRRLKVPPPINQFTQT 255
NPLFEKRPK F IG + P +DL RFV WPK +RIQRQ+ +L++RLKVPP +NQFT+T
Sbjct: 22 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRT 79
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 91.1 bits (216), Expect = 3e-19
Identities = 38/58 (65%), Positives = 47/58 (81%)
Frame = +1
Query: 82 NPLFEKRPKNFAIGQGIQPTRDLSRFVXWPKYIRIQRQKAVLQRRLKVPPPINQFTQT 255
NPLFEKRPK F IG + P +DL RFV WPK +RIQRQ+ +L++RLKVPP +NQFT+T
Sbjct: 6 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRT 63
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 91.1 bits (216), Expect = 3e-19
Identities = 39/58 (67%), Positives = 47/58 (81%)
Frame = +1
Query: 82 NPLFEKRPKNFAIGQGIQPTRDLSRFVXWPKYIRIQRQKAVLQRRLKVPPPINQFTQT 255
NPLFEKRPK F IG + P +DL RFV WPK +RIQRQ+ VL++RLKVPP +NQFT+T
Sbjct: 23 NPLFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQRRVLKQRLKVPPALNQFTRT 80
>05_03_0573 - 15635338-15635502,15637573-15637632,15637776-15638033
Length = 160
Score = 28.3 bits (60), Expect = 2.4
Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = +2
Query: 53 SKRLSPRKL*ILS---SRRGQRTLLLVRAFSQLVTCPDLXDGPSISASSVRRLYF 208
S L PR L +L +RRG R L +VRA S V PD S LYF
Sbjct: 13 SPSLGPRSLRLLRGALARRGSRRLGVVRAASAEVAAPDAAAAAPGYTSDSLILYF 67
>10_08_0178 - 15475614-15475850,15476716-15476808
Length = 109
Score = 27.9 bits (59), Expect = 3.1
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 166 WPKYIRIQRQKAVLQ-RRLKVPPPINQFTQTWTRL 267
W Y + RQKAV + R++ PPP +T RL
Sbjct: 4 WGAYTEVARQKAVGRGRKVAAPPPNFPLVKTMPRL 38
>07_03_1414 - 26403361-26403969
Length = 202
Score = 27.9 bits (59), Expect = 3.1
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -1
Query: 189 LDADILGPSYKSGQVTSWLNALTNSKVLWPLLEERIHNFLGLNLFD 52
L A + P + G++ + + +T + L P LEE + GL L+D
Sbjct: 77 LSAAVSNPGFFFGRMVVFNDPVTEGRALPPSLEETVVRAQGLYLYD 122
>06_03_0392 +
20318728-20319309,20319596-20319725,20319844-20319895,
20319995-20320061,20320547-20320633,20322526-20322567,
20322635-20322740,20323155-20323219,20323299-20323343,
20323442-20323549,20323636-20323723,20324147-20324193,
20324355-20324363
Length = 475
Score = 27.9 bits (59), Expect = 3.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 180 PHPASEGCTSASSESAPSDQP 242
P PA E +A+ E+APSD P
Sbjct: 53 PQPAPEEAPAAAEEAAPSDDP 73
>07_03_0935 -
22738221-22738328,22739207-22739237,22739901-22740095,
22740693-22740782,22740900-22741037,22741959-22742108,
22743589-22744766
Length = 629
Score = 27.5 bits (58), Expect = 4.1
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +3
Query: 189 ASEGCTSASSESAPSDQPI--YPDLDKTTAKGL 281
A++ T ASS S P D PI LD+ TA GL
Sbjct: 94 AADSTTDASSVSNPEDDPIDELDVLDEDTASGL 126
>06_01_0820 + 6202348-6203313
Length = 321
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -3
Query: 232 EGALSDDAEVQPSDAGCGYTWAIXQIWTSHELAECPDQ 119
EG S V SDAG GY +A W + +CP Q
Sbjct: 170 EGFCSVRCGVHGSDAGAGYAYA----WVGNAERQCPGQ 203
>06_01_0821 + 6210368-6211285
Length = 305
Score = 27.1 bits (57), Expect = 5.5
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = -3
Query: 232 EGALSDDAEVQPSDAGCGYTWAIXQIWTSHELAECPDQ 119
EG S V SDAG GY +A W +CP Q
Sbjct: 154 EGFCSARCGVHGSDAGAGYAYA----WAGDAERQCPGQ 187
>07_03_1422 + 26462871-26463434,26463772-26463897
Length = 229
Score = 26.6 bits (56), Expect = 7.2
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -1
Query: 189 LDADILGPSYKSGQVTSWLNALTNSKVLWPLLEERIHNFLGLNLFD 52
L + P Y G+V + + +T + L P LEE GL L D
Sbjct: 75 LSTAVSSPGYFFGRVVVFNDPMTEGRALPPSLEETAVRAQGLYLLD 120
>07_03_1413 - 26396426-26396890
Length = 154
Score = 26.6 bits (56), Expect = 7.2
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -1
Query: 189 LDADILGPSYKSGQVTSWLNALTNSKVLWPLLEERIHNFLGLNLFD 52
L + P Y G+V + + +T + L P LEE GL L D
Sbjct: 29 LSTAVSSPGYFFGRVVVFNDPMTEGRALPPSLEETAVRAQGLYLLD 74
>08_02_0294 -
15432424-15432669,15433007-15433099,15433168-15433251,
15434311-15434446,15434601-15434746,15435017-15435242,
15435885-15435967,15436867-15437061,15437148-15437246,
15438237-15438350,15438424-15438511,15438790-15438995,
15439306-15439358,15440473-15440776,15441278-15441366,
15441584-15441958,15442382-15442446,15442945-15442970,
15444007-15444225
Length = 948
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -1
Query: 216 TTLKYSLLTLDADILGPSYKSGQVTSW 136
TTLK A I+G K+GQVT W
Sbjct: 320 TTLKRDGSDFSAAIIGSLVKAGQVTIW 346
>02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-282648,
282768-282923,283224-283349,283426-283560,283815-283942,
284037-284148,284233-284547,284655-284771,284871-285166,
285252-285783,287980-288082,288808-288881,288965-289062,
289340-289380,289977-290032,290170-290244,290377-290469,
290602-290850,290930-291002,291681-291766,291853-291938,
292067-292142,292280-292347,292430-292496,292570-292665,
292741-292843,293214-293309,293396-293466
Length = 2047
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 180 PHPASEGCTSASSESAPSDQPIYPDLDKTTAKGLFKILEKY 302
P+ EG +S SSE PI P ++ +A+G + +Y
Sbjct: 1295 PNGFMEGKSSTSSEHGSGMPPIPPSQNQFSARGRMGVRSRY 1335
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,576,337
Number of Sequences: 37544
Number of extensions: 175132
Number of successful extensions: 490
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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