Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1032.Seq
         (399 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)              97   4e-21
SB_5823| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.46 
SB_20038| Best HMM Match : wnt (HMM E-Value=3.8e-05)                   28   3.2  
SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.3  
SB_39895| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.6  
SB_4001| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0056)           27   5.6  
SB_52288| Best HMM Match : Coprinus_mating (HMM E-Value=0.86)          26   9.8  
SB_42441| Best HMM Match : DUF1484 (HMM E-Value=0.48)                  26   9.8  

>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score = 97.5 bits (232), Expect = 4e-21
 Identities = 42/61 (68%), Positives = 50/61 (81%)
 Frame = +1

Query: 82  NPLFEKRPKNFAIGQGIQPTRDLSRFVXWPKYIRIQRQKAVLQRRLKVPPPINQFTQTWT 261
           NPL EKRP+NF IG  IQP RDLSRFV WP+Y+++QRQK++L +RLKVPP INQFTQ   
Sbjct: 29  NPLIEKRPRNFGIGGDIQPKRDLSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQALD 88

Query: 262 R 264
           R
Sbjct: 89  R 89


>SB_5823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2324

 Score = 30.7 bits (66), Expect = 0.46
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +1

Query: 160  VXWPKYIRIQRQKAVLQRRLKVPPPINQFTQTWTRLQLRAFSRFWRN 300
            V WP +  I    A L + LK P   N  T+      L ++S FW N
Sbjct: 1991 VLWPSHCVIDSWGAELHQDLKAPEKNNIITRKGFDSDLDSYSAFWNN 2037


>SB_20038| Best HMM Match : wnt (HMM E-Value=3.8e-05)
          Length = 155

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +3

Query: 147 LVQICXMAQVYPHP-ASEGCTSASSESAPSDQPIYPDLDKTTAKGLFKILEK 299
           L ++   A  Y HP AS+G T        SD P Y    +T     F+I++K
Sbjct: 70  LPRLAPSAAHYCHPDASKGSTGVLGRVCSSDNPDYLKCSETCMSCRFRIVKK 121


>SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 204 TSASSESAPSDQPIYPDLDKTTAKGL 281
           T+ASSE+APS  P  PD    + K L
Sbjct: 43  TAASSEAAPSSAPSMPDYGDMSRKRL 68


>SB_39895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 327

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 147 LVQICXMAQVYPHPASEGCTSASSESAPSDQPIYPD 254
           +VQ+  + Q+     SE C   +S SA S+ P YP+
Sbjct: 46  VVQLTGVIQLTEWEFSEACHPYTSGSASSEDPQYPE 81


>SB_4001| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0056)
          Length = 508

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 183 HPA-SEGCTSASSESAPSDQPIYPDLDKTTAKGLFKILEK 299
           HP  S GC++ SS S  +  P+ PD      + LF  L++
Sbjct: 76  HPQLSSGCSTNSSSSQTAPFPVIPDTIIANMQSLFAKLDE 115


>SB_52288| Best HMM Match : Coprinus_mating (HMM E-Value=0.86)
          Length = 769

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 139 TRDLSRFVXWPKYIRIQRQKAVLQRRLKVPPP 234
           TRDL  F+   +YI I++    + RRL +P P
Sbjct: 29  TRDL-HFMNTEEYIMIRKAAKAIVRRLSLPSP 59


>SB_42441| Best HMM Match : DUF1484 (HMM E-Value=0.48)
          Length = 776

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -1

Query: 243 LVDRRGHFQTTLKYSLLTLDADILGPSYKSGQVTSWLNALTNSK 112
           +   R H Q  L +++  +  D+LG    S Q++  + ALTN++
Sbjct: 323 MAKNRKHCQEKLDFAMNDIVFDLLGVGRSSRQISPEVCALTNTE 366


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,386,688
Number of Sequences: 59808
Number of extensions: 187060
Number of successful extensions: 433
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)