Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1032.Seq
         (399 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical ...    96   9e-21
AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical ...    96   9e-21
AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...    96   9e-21
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...    96   9e-21
AF016444-5|AAB65932.1|  330|Caenorhabditis elegans Serpentine re...    29   1.6  
Z82096-3|CAD45613.1|  548|Caenorhabditis elegans Hypothetical pr...    28   2.1  

>AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18b protein.
          Length = 199

 Score = 95.9 bits (228), Expect = 9e-21
 Identities = 41/55 (74%), Positives = 48/55 (87%)
 Frame = +1

Query: 82  NPLFEKRPKNFAIGQGIQPTRDLSRFVXWPKYIRIQRQKAVLQRRLKVPPPINQF 246
           NPLFEKR +NF IGQ IQP +D++RFV WPKYIR+QRQ A+LQ+RLKVPP INQF
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQF 187


>AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18a protein.
          Length = 234

 Score = 95.9 bits (228), Expect = 9e-21
 Identities = 41/55 (74%), Positives = 48/55 (87%)
 Frame = +1

Query: 82  NPLFEKRPKNFAIGQGIQPTRDLSRFVXWPKYIRIQRQKAVLQRRLKVPPPINQF 246
           NPLFEKR +NF IGQ IQP +D++RFV WPKYIR+QRQ A+LQ+RLKVPP INQF
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQF 187


>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score = 95.9 bits (228), Expect = 9e-21
 Identities = 41/55 (74%), Positives = 48/55 (87%)
 Frame = +1

Query: 82  NPLFEKRPKNFAIGQGIQPTRDLSRFVXWPKYIRIQRQKAVLQRRLKVPPPINQF 246
           NPLFEKR +NF IGQ IQP +D++RFV WPKYIR+QRQ A+LQ+RLKVPP INQF
Sbjct: 30  NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQF 84


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score = 95.9 bits (228), Expect = 9e-21
 Identities = 41/55 (74%), Positives = 48/55 (87%)
 Frame = +1

Query: 82  NPLFEKRPKNFAIGQGIQPTRDLSRFVXWPKYIRIQRQKAVLQRRLKVPPPINQF 246
           NPLFEKR +NF IGQ IQP +D++RFV WPKYIR+QRQ A+LQ+RLKVPP INQF
Sbjct: 30  NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQF 84


>AF016444-5|AAB65932.1|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 6 protein.
          Length = 330

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 11/30 (36%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = -2

Query: 338 QPLXPGCFSLRPVFLQNLEKA-LSCSLVQV 252
           QP+   C +++P F+ N+EKA + C ++Q+
Sbjct: 171 QPVMNYCTAVKPGFVTNIEKAFIGCLIIQI 200


>Z82096-3|CAD45613.1|  548|Caenorhabditis elegans Hypothetical
           protein ZK909.2c protein.
          Length = 548

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 186 PASEGCTSASSESAPSDQPIYPDLDKTTAKGLFKI 290
           P+S   TS S  S+PSD P     D T   G+F +
Sbjct: 57  PSSTTTTSPSMPSSPSDSPSDDFSDDTNTSGVFPL 91


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,604,463
Number of Sequences: 27780
Number of extensions: 136550
Number of successful extensions: 356
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)