Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1032.Seq
         (399 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   2.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   3.9  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    20   9.1  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    20   9.1  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    20   9.1  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 13/59 (22%), Positives = 28/59 (47%)
 Frame = +1

Query: 103 PKNFAIGQGIQPTRDLSRFVXWPKYIRIQRQKAVLQRRLKVPPPINQFTQTWTRLQLRA 279
           P    I + ++   D + +    +  +    +  L+ ++ VPP I QF  ++T+L + A
Sbjct: 541 PNGTLIIENVERMSDQATYTCVARNAQGYSARGTLEVQVMVPPTIQQF--SFTKLPMNA 597


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 197 RLYFSVV*KCPLRSTNLPRPGQDYS 271
           +L   +V  C  RS +  RPG DYS
Sbjct: 2   KLLLLIVLGCT-RSAHFARPGGDYS 25


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = -1

Query: 63  NLFDHQWGGGY 31
           ++ DH +GGG+
Sbjct: 659 SIIDHSYGGGF 669


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = -1

Query: 63  NLFDHQWGGGY 31
           ++ DH +GGG+
Sbjct: 697 SIIDHSYGGGF 707


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 240 PIYPDLDKTTAKGLF 284
           P+ PDL+   A GL+
Sbjct: 325 PVMPDLNALIATGLY 339


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,048
Number of Sequences: 438
Number of extensions: 1599
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)