Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1031.Seq
         (499 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4PHN6 Cluster: Beta-N-acetylglucosaminidase 1; n=1; Bo...    97   3e-19
UniRef50_Q0AZN0 Cluster: Peptidoglycan glycosyltransferase; n=1;...    33   4.7  
UniRef50_Q97ES2 Cluster: HAD superfamily hydrolase; n=1; Clostri...    32   6.2  

>UniRef50_A4PHN6 Cluster: Beta-N-acetylglucosaminidase 1; n=1;
           Bombyx mori|Rep: Beta-N-acetylglucosaminidase 1 - Bombyx
           mori (Silk moth)
          Length = 611

 Score = 96.7 bits (230), Expect = 3e-19
 Identities = 40/41 (97%), Positives = 40/41 (97%)
 Frame = +3

Query: 372 HLAGVLCNVESXFDEITPQIYEPSWMYKCVPDEGCQRSEHP 494
           HLAGVLCNVES FDEITPQIYEPSWMYKCVPDEGCQRSEHP
Sbjct: 14  HLAGVLCNVESTFDEITPQIYEPSWMYKCVPDEGCQRSEHP 54


>UniRef50_Q0AZN0 Cluster: Peptidoglycan glycosyltransferase; n=1;
           Syntrophomonas wolfei subsp. wolfei str. Goettingen|Rep:
           Peptidoglycan glycosyltransferase - Syntrophomonas
           wolfei subsp. wolfei (strain Goettingen)
          Length = 568

 Score = 32.7 bits (71), Expect = 4.7
 Identities = 17/35 (48%), Positives = 22/35 (62%)
 Frame = +1

Query: 22  WHNEYILRADQNSE*INIKLKRQKPGPV*FSCLVS 126
           +H EY+L+ DQNS  IN  L R  PG + F  LV+
Sbjct: 280 YHIEYLLKHDQNSSLINRALSRYHPGSL-FKILVT 313


>UniRef50_Q97ES2 Cluster: HAD superfamily hydrolase; n=1;
           Clostridium acetobutylicum|Rep: HAD superfamily
           hydrolase - Clostridium acetobutylicum
          Length = 280

 Score = 32.3 bits (70), Expect = 6.2
 Identities = 19/87 (21%), Positives = 40/87 (45%)
 Frame = -1

Query: 376 KCMVVINANSRLSAMVKRIKGLNDISLTLSIRQRLASCVKXXXXXIKVNNSSDFFRHSLN 197
           KC ++     ++SA+ + +K +NDI +  S R  +    K       + + ++F+     
Sbjct: 161 KCEIIDKDVKKISAIREELKRMNDIEVVSSSRHNIEVTSKNVSKGNAIKSLAEFYGIKRE 220

Query: 196 EIKTHKYNTNELRVTNKFCISLVSKRG 116
           EI T   + N+L +     + +V + G
Sbjct: 221 EIITIGDSENDLSMIEYGGLGVVMENG 247


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 456,120,208
Number of Sequences: 1657284
Number of extensions: 8109206
Number of successful extensions: 15945
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15928
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29273652170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)