Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1031.Seq
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0936 - 28955486-28955683,28956320-28956424,28956550-289566...    27   8.4  

>03_05_0936 -
           28955486-28955683,28956320-28956424,28956550-28956693,
           28957078-28957356,28957480-28957587,28958288-28958567,
           28958724-28960029,28961301-28962342
          Length = 1153

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 235 VNNSSDFFRHSLNEIKTHKY 176
           + N+ DFF  SL+EIK  KY
Sbjct: 835 IKNNKDFFDQSLDEIKLLKY 854


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,040,160
Number of Sequences: 37544
Number of extensions: 209524
Number of successful extensions: 329
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)