Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1031.Seq
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50872-8|CAA90758.1|  865|Caenorhabditis elegans Hypothetical pr...    28   3.3  
AL031269-3|CAA20334.1|  865|Caenorhabditis elegans Hypothetical ...    28   3.3  
AB055111-1|BAB62292.1|  865|Caenorhabditis elegans VHA-6 protein.      28   3.3  
U50309-4|AAG24133.1|  267|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z77133-7|CAB00865.2|  735|Caenorhabditis elegans Hypothetical pr...    27   7.6  
U00025-5|AAA50616.1|  170|Caenorhabditis elegans Hypothetical pr...    27   7.6  
AL008868-4|CAO82021.1|  735|Caenorhabditis elegans Hypothetical ...    27   7.6  

>Z50872-8|CAA90758.1|  865|Caenorhabditis elegans Hypothetical
           protein VW02B12L.1 protein.
          Length = 865

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -1

Query: 139 ISLVSKRGKRTKPDLVFVFLI*CLFI 62
           +SL++  G R+  D+VFVF+  CLF+
Sbjct: 570 LSLMNHIGNRSVVDIVFVFIPQCLFL 595


>AL031269-3|CAA20334.1|  865|Caenorhabditis elegans Hypothetical
           protein VW02B12L.1 protein.
          Length = 865

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -1

Query: 139 ISLVSKRGKRTKPDLVFVFLI*CLFI 62
           +SL++  G R+  D+VFVF+  CLF+
Sbjct: 570 LSLMNHIGNRSVVDIVFVFIPQCLFL 595


>AB055111-1|BAB62292.1|  865|Caenorhabditis elegans VHA-6 protein.
          Length = 865

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -1

Query: 139 ISLVSKRGKRTKPDLVFVFLI*CLFI 62
           +SL++  G R+  D+VFVF+  CLF+
Sbjct: 570 LSLMNHIGNRSVVDIVFVFIPQCLFL 595


>U50309-4|AAG24133.1|  267|Caenorhabditis elegans Hypothetical
           protein F58G4.4 protein.
          Length = 267

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +3

Query: 414 EITPQIYEPSWMYKCVPDEGCQRSEHP 494
           E  P  Y P   Y C   E C R E P
Sbjct: 130 ECLPSFYGPKCQYYCTSGEKCSRDECP 156


>Z77133-7|CAB00865.2|  735|Caenorhabditis elegans Hypothetical
           protein K03A11.1 protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -1

Query: 412 SNXLSTLH-STPAKCMVVINANSRLSAMVKRIKGLNDISLTLSIRQRL 272
           SN  + +H STP + +   NAN+ L A+   +K   ++ L  S +Q++
Sbjct: 129 SNVHNGVHISTPTENLAENNANNGLDAIADLVKPYQNVQLESSSKQKV 176


>U00025-5|AAA50616.1|  170|Caenorhabditis elegans Hypothetical
           protein PAR2.1 protein.
          Length = 170

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -1

Query: 211 RHSLNEIKTHKYNTNELRVTNKFCISLVSKRGKRTKPDLVF 89
           +H   E + H Y+ N++ +     +  + K G+  KP L+F
Sbjct: 41  QHHNPEQRRHAYSVNKVELVGGVALDPLYKTGRNGKPYLIF 81


>AL008868-4|CAO82021.1|  735|Caenorhabditis elegans Hypothetical
           protein K03A11.1 protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -1

Query: 412 SNXLSTLH-STPAKCMVVINANSRLSAMVKRIKGLNDISLTLSIRQRL 272
           SN  + +H STP + +   NAN+ L A+   +K   ++ L  S +Q++
Sbjct: 129 SNVHNGVHISTPTENLAENNANNGLDAIADLVKPYQNVQLESSSKQKV 176


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,861,294
Number of Sequences: 27780
Number of extensions: 205436
Number of successful extensions: 436
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)