Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1030.Seq
         (548 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O44017 Cluster: ER lumen protein retaining receptor; n=...    33   4.4  
UniRef50_A2F3K7 Cluster: Adenylate and Guanylate cyclase catalyt...    33   5.8  

>UniRef50_O44017 Cluster: ER lumen protein retaining receptor; n=3;
           Eukaryota|Rep: ER lumen protein retaining receptor -
           Entamoeba histolytica
          Length = 215

 Score = 33.1 bits (72), Expect = 4.4
 Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
 Frame = -1

Query: 251 NFFFFHNTFLKTIIRLSRSMYTVFYFEYNFFSKYDAL--VWLVHFVLYCSIVFPYVVFST 78
           NF+  +NT LK I+ L+ S YT++     F + YD +     V +++   IV  + +F+ 
Sbjct: 56  NFYSLYNTILK-IVYLTTSAYTIYLISKRFRATYDKIHDTLNVWYLIVPCIVLAF-IFTE 113

Query: 77  *NNISHLC 54
             +I+ +C
Sbjct: 114 DYSITEIC 121


>UniRef50_A2F3K7 Cluster: Adenylate and Guanylate cyclase catalytic
           domain containing protein; n=1; Trichomonas vaginalis
           G3|Rep: Adenylate and Guanylate cyclase catalytic domain
           containing protein - Trichomonas vaginalis G3
          Length = 1588

 Score = 32.7 bits (71), Expect = 5.8
 Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
 Frame = -1

Query: 389 TFVCI*KPNKKKVS*FSFVRLLSNR*VKIYF*RIF--IDLTPSMIDV*NFFFFHNTFLKT 216
           TF+ + K NK      SFV  L N    +YF  +    +     I+V     F+ TF++T
Sbjct: 166 TFLLLAKGNKNVSVIISFVLALGNEIYILYFYIVIQHFNAMSLFINVSPLLNFNPTFMQT 225

Query: 215 IIRLSRSMYTVFYFEYNFFSKYDALVWLVHFVLYCSIV 102
            + LS     + YF ++ F  +   V ++  +  CS +
Sbjct: 226 -VTLSSHCTVLSYFLFSLFENWSFFVTVIFCLGCCSFI 262


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 465,356,003
Number of Sequences: 1657284
Number of extensions: 8654210
Number of successful extensions: 19638
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19626
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 35822246242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)