Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1030.Seq
         (548 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   1.3  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   1.3  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   1.3  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    22   3.1  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    22   4.1  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    21   5.4  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +1

Query: 289  MR*KYIFTYLLLNSL 333
            +R K +FT+L+LNSL
Sbjct: 1221 LRDKMVFTFLMLNSL 1235


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +1

Query: 289  MR*KYIFTYLLLNSL 333
            +R K +FT+L+LNSL
Sbjct: 1221 LRDKMVFTFLMLNSL 1235


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 304 YIFNAFLLI*RHL*LMYETFFFFIIH 227
           Y + AF+L   HL L+   ++F+ +H
Sbjct: 240 YFYYAFILFTVHLLLLVCIYYFYYMH 265



 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -3

Query: 132 CAFCLVL*HSISVCSFQHVK*HIAFV 55
           CAF +   H +  C+F     H+ F+
Sbjct: 171 CAFIIFTMHLLFCCAFIFFNMHLLFL 196


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 193 CILYFILNIIFLVNTML 143
           C LY+IL I  +VN  L
Sbjct: 168 CSLYYILQITLIVNYAL 184


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 6/10 (60%), Positives = 10/10 (100%)
 Frame = +1

Query: 34  CIYVTLLHKC 63
           CI++++LHKC
Sbjct: 85  CIHLSVLHKC 94


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 387 IRLYLKTKQKKSFLIQFCKTV 325
           I LY  +K  +  LIQFC  V
Sbjct: 168 IVLYTLSKMSQVMLIQFCAFV 188


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,007
Number of Sequences: 336
Number of extensions: 2705
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13516233
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)