Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1030.Seq
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0690 - 5152224-5152386,5152490-5152687,5152815-5153014,515...    30   1.4  
09_02_0473 - 9690050-9690802,9690891-9691423,9692202-9692776,969...    29   3.2  
06_01_0883 + 6768998-6769381,6769518-6769616,6769664-6769726,677...    28   4.3  
06_03_0812 + 24847716-24847988,24848123-24848221,24848977-248492...    27   9.9  

>02_01_0690 -
           5152224-5152386,5152490-5152687,5152815-5153014,
           5153122-5153223,5153414-5153550,5153688-5153798,
           5156092-5156344,5157954-5158052,5158449-5158739
          Length = 517

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = -1

Query: 233 NTFLKTIIRLSRSMYTVFYFEYNFFSKYDALVWLVHFVLYCSIVFPYVVF 84
           N F K ++ +  +++   +  YNFF     +  +V F  YC ++ P  +F
Sbjct: 322 NLFRKMLMEIKVTIWKKIHVIYNFFLIRKIIAHIVTFAFYC-LIIPATIF 370


>09_02_0473 -
           9690050-9690802,9690891-9691423,9692202-9692776,
           9693476-9693507
          Length = 630

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +1

Query: 280 SIKMR*KYIFTYLLLNSLTKLN 345
           ++K R +YIFTYLL N   +LN
Sbjct: 333 AVKKRDEYIFTYLLQNKAVELN 354


>06_01_0883 +
           6768998-6769381,6769518-6769616,6769664-6769726,
           6770883-6770931,6771338-6771405,6771463-6771715,
           6772244-6772380,6772708-6772821,6773059-6773258,
           6773367-6773561,6773650-6773812
          Length = 574

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 182 FYFEYNFFSKYDALVWLVHFVLYCSIVFPYVV 87
           FY  Y+FF     +  +V F+LYC +V P+ V
Sbjct: 397 FYLLYSFFFVRKVVAHVVPFMLYC-VVIPFSV 427


>06_03_0812 +
           24847716-24847988,24848123-24848221,24848977-24849229,
           24850064-24850174,24850558-24850694,24850821-24850934,
           24851025-24851224,24851366-24851560,24851636-24851795
          Length = 513

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = -1

Query: 233 NTFLKTIIRLSRS----MYTVFYFEYNFFSKYDALVWLVHFVLYCSIV 102
           N F K ++ ++ +    ++   Y  YNFF     +  +V FV YC +V
Sbjct: 316 NLFRKMLVEIATNKKVTLWKKIYVIYNFFLVRKIIGHIVTFVFYCLVV 363


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,550,037
Number of Sequences: 37544
Number of extensions: 198375
Number of successful extensions: 387
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)