Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1030.Seq
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81115-1|CAB03291.1|  365|Caenorhabditis elegans Hypothetical pr...    33   0.10 
D83738-1|BAA12091.1|  366|Caenorhabditis elegans aldolase Ce1 pr...    33   0.10 
Z68104-7|CAI79159.1| 1086|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z68104-4|CAA92116.1| 1107|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z68104-3|CAA92115.1| 1119|Caenorhabditis elegans Hypothetical pr...    30   1.3  
AF232770-1|AAF37866.1| 1107|Caenorhabditis elegans SLO-2 potassi...    30   1.3  
AF173828-1|AAD51350.1| 1119|Caenorhabditis elegans putative pota...    30   1.3  
Z49867-2|CAA90028.1|  346|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z93383-7|CAB07621.1|  285|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>Z81115-1|CAB03291.1|  365|Caenorhabditis elegans Hypothetical
           protein T05D4.1 protein.
          Length = 365

 Score = 33.5 bits (73), Expect = 0.10
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = -1

Query: 506 NGLAAVGKYVAGSIPSLAASKSNFVKSHAY 417
           N LA+VGKY   +    AAS+S FV +H+Y
Sbjct: 336 NSLASVGKYTGDASADAAASQSLFVANHSY 365


>D83738-1|BAA12091.1|  366|Caenorhabditis elegans aldolase Ce1
           protein.
          Length = 366

 Score = 33.5 bits (73), Expect = 0.10
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = -1

Query: 506 NGLAAVGKYVAGSIPSLAASKSNFVKSHAY 417
           N LA+VGKY   +    AAS+S FV +H+Y
Sbjct: 337 NSLASVGKYTGDASADAAASQSLFVANHSY 366


>Z68104-7|CAI79159.1| 1086|Caenorhabditis elegans Hypothetical
           protein F08B12.3c protein.
          Length = 1086

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = -1

Query: 245 FFFHNTFLKTIIRLSRSMYTVFYFEYNFFSKYDALVWLVHFVLYCSIVFPYVV 87
           F F   FL+T+      +YT+  F  ++      L+  +HF+L     FP+++
Sbjct: 99  FDFKIWFLQTMFACISMVYTILVFYLSYSGSVVRLLINIHFLLELITSFPFII 151


>Z68104-4|CAA92116.1| 1107|Caenorhabditis elegans Hypothetical
           protein F08B12.3b protein.
          Length = 1107

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = -1

Query: 245 FFFHNTFLKTIIRLSRSMYTVFYFEYNFFSKYDALVWLVHFVLYCSIVFPYVV 87
           F F   FL+T+      +YT+  F  ++      L+  +HF+L     FP+++
Sbjct: 120 FDFKIWFLQTMFACISMVYTILVFYLSYSGSVVRLLINIHFLLELITSFPFII 172


>Z68104-3|CAA92115.1| 1119|Caenorhabditis elegans Hypothetical
           protein F08B12.3a protein.
          Length = 1119

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = -1

Query: 245 FFFHNTFLKTIIRLSRSMYTVFYFEYNFFSKYDALVWLVHFVLYCSIVFPYVV 87
           F F   FL+T+      +YT+  F  ++      L+  +HF+L     FP+++
Sbjct: 120 FDFKIWFLQTMFACISMVYTILVFYLSYSGSVVRLLINIHFLLELITSFPFII 172


>AF232770-1|AAF37866.1| 1107|Caenorhabditis elegans SLO-2 potassium
           channel protein.
          Length = 1107

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = -1

Query: 245 FFFHNTFLKTIIRLSRSMYTVFYFEYNFFSKYDALVWLVHFVLYCSIVFPYVV 87
           F F   FL+T+      +YT+  F  ++      L+  +HF+L     FP+++
Sbjct: 120 FDFKIWFLQTMFACISMVYTILVFYLSYSGSVVRLLINIHFLLELITSFPFII 172


>AF173828-1|AAD51350.1| 1119|Caenorhabditis elegans putative
           potassium channel Slo-2 protein.
          Length = 1119

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = -1

Query: 245 FFFHNTFLKTIIRLSRSMYTVFYFEYNFFSKYDALVWLVHFVLYCSIVFPYVV 87
           F F   FL+T+      +YT+  F  ++      L+  +HF+L     FP+++
Sbjct: 120 FDFKIWFLQTMFACISMVYTILVFYLSYSGSVVRLLINIHFLLELITSFPFII 172


>Z49867-2|CAA90028.1|  346|Caenorhabditis elegans Hypothetical
           protein C33D3.4 protein.
          Length = 346

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -3

Query: 309 KDIFLTHFY*FNAIYD*CMKLFFFS*YIPK-NNNSSKSFDVYC 184
           KD+ L   Y F+  Y  C+ L   +    K NNN  + FD YC
Sbjct: 260 KDVNLQVLYHFSVSYSTCIMLSILALTGGKENNNEIEKFDAYC 302


>Z93383-7|CAB07621.1|  285|Caenorhabditis elegans Hypothetical
           protein F54B8.8 protein.
          Length = 285

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -1

Query: 230 TFLKTIIRLSRSMYTVFYFEYNFFSKYDALVWLVHFVLYCSIVFPYVVF 84
           TFL T+ R+  S + +FY  YN   K    ++L+ F+    I+  YV+F
Sbjct: 103 TFLVTMDRVIGSFFPIFY--YNHRHKLSNYIFLI-FISSVVILDQYVLF 148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,329,155
Number of Sequences: 27780
Number of extensions: 230793
Number of successful extensions: 516
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)