Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1030.Seq
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    24   1.2  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   4.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   4.7  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   8.2  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -2

Query: 193 CILYFILNIIFLVNTML*FGLCILSCTVA 107
           CIL+F++ ++F+    +  GL I S ++A
Sbjct: 210 CILFFLIPMVFIAVLYIRIGLRIQSDSLA 238


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +2

Query: 122 QNAQAKLKHRIY*KNYIQNKIQYTSNDLDELLFLGM 229
           ++ Q +L++R+Y  +   +K    S D D +  LG+
Sbjct: 202 ESEQHRLQNRLYTNDSTSSKTDDDSIDFDRMNSLGL 237


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +2

Query: 122 QNAQAKLKHRIY*KNYIQNKIQYTSNDLDELLFLGM 229
           ++ Q +L++R+Y  +   +K    S D D +  LG+
Sbjct: 240 ESEQHRLQNRLYTNDSTSSKTDDDSIDFDRMNSLGL 275


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 12/47 (25%), Positives = 19/47 (40%)
 Frame = +2

Query: 374 KYKRMLESVNSSSFNKREI*QSSI*KRPAKE*SRQRICRLLRDRWLS 514
           K K + + +NS    K+        KRP     +  +  + R RW S
Sbjct: 1   KEKHLTQRINSCDLLKKRNENDPFLKRPITGDEKWVVNNIKRKRWWS 47


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,830
Number of Sequences: 438
Number of extensions: 2784
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)