Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV1030.Seq
(548 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g56000.1 68416.m06222 glycosyl transferase family 2 protein s... 29 1.5
At5g15920.1 68418.m01862 structural maintenance of chromosomes (... 27 6.2
At4g16590.1 68417.m02510 glucosyltransferase-related low similar... 27 6.2
At2g33380.1 68415.m04091 calcium-binding RD20 protein (RD20) ind... 27 6.2
At5g62090.2 68418.m07793 expressed protein 27 8.3
At5g62090.1 68418.m07792 expressed protein 27 8.3
At5g52640.1 68418.m06535 heat shock protein 81-1 (HSP81-1) / hea... 27 8.3
At5g18410.2 68418.m02167 expressed protein similar to p53 induci... 27 8.3
At5g18410.1 68418.m02166 expressed protein similar to p53 induci... 27 8.3
At1g24070.1 68414.m03038 glycosyl transferase family 2 protein s... 27 8.3
At1g23480.2 68414.m02946 glycosyl transferase family 2 protein s... 27 8.3
At1g23480.1 68414.m02945 glycosyl transferase family 2 protein s... 27 8.3
At1g01580.1 68414.m00075 ferric-chelate reductase, putative simi... 27 8.3
>At3g56000.1 68416.m06222 glycosyl transferase family 2 protein
similar to beta-(1-3)-glucosyl transferase GB:AAC62210
GI:3687658 from [Bradyrhizobium japonicum], cellulose
synthase from Agrobacterium tumeficiens [gi:710492] and
Agrobacterium radiobacter [gi:710493]; contains Pfam
glycosyl transferase, group 2 family protein domain
PF00535
Length = 535
Score = 29.5 bits (63), Expect = 1.5
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -1
Query: 239 FHNTFLKTIIRLSRSMYTVFYFEYNFFSKYDALVWLVHFVLYCSIVFPYVVF 84
F ++ I + S++ Y YNFF +V + FV YC I+ V+F
Sbjct: 335 FKKIAMEIIKNQNVSLWKKVYLIYNFFFLRKIVVHIFTFVFYCVILPATVIF 386
>At5g15920.1 68418.m01862 structural maintenance of chromosomes
(SMC) family protein (MSS2) similar to SMC-related
protein MSS2 [Arabidopsis thaliana] GI:9965743; contains
Pfam profiles PF02483: SMC family C-terminal domain,
PF02463: RecF/RecN/SMC N terminal domain
Length = 1053
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -3
Query: 432 QISRLLNEDELTDSNIRLYLKTKQKKSFLIQFCK 331
++ R + E E+ NI+ Y KT Q+ S +++CK
Sbjct: 747 ELERKIRESEI---NIKQYEKTAQQLSLAVEYCK 777
>At4g16590.1 68417.m02510 glucosyltransferase-related low similarity
to beta-(1-3)-glucosyl transferase [Bradyrhizobium
japonicum] GI:3687658
Length = 401
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = -1
Query: 239 FHNTFLKTIIRLSRSMYTVFYFEYNFFSKYDALVWLVHFVLYCSIVFPYVVF 84
F ++ I S++ FY Y+FF V + F YC I+ P VF
Sbjct: 212 FRKMTMEIIFNKRVSIWKKFYVIYSFFFVRKVAVHFLTFFFYC-IIVPTSVF 262
>At2g33380.1 68415.m04091 calcium-binding RD20 protein (RD20)
induced by abscisic acid during dehydration
PMID:10965948; putative transmembrane channel protein
PMID:10965948; identical to GI:10862968 [Arabidopsis
thaliana]; contains EF-hand domain
Length = 236
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 54 TQMRYVILRAENYIRKYYATVQDKM 128
T+ RYV + EN KY TV+DK+
Sbjct: 142 TEGRYVPVNLENIFSKYALTVKDKL 166
>At5g62090.2 68418.m07793 expressed protein
Length = 816
Score = 27.1 bits (57), Expect = 8.3
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = +2
Query: 176 NKIQYTSNDLDELLFLGMYYEKK 244
N+I++ S LDELL+LG+ E++
Sbjct: 379 NEIKFASGVLDELLYLGVPSERR 401
>At5g62090.1 68418.m07792 expressed protein
Length = 816
Score = 27.1 bits (57), Expect = 8.3
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = +2
Query: 176 NKIQYTSNDLDELLFLGMYYEKK 244
N+I++ S LDELL+LG+ E++
Sbjct: 379 NEIKFASGVLDELLYLGVPSERR 401
>At5g52640.1 68418.m06535 heat shock protein 81-1 (HSP81-1) / heat
shock protein 83 (HSP83) nearly identical to SP|P27323
Heat shock protein 81-1 (HSP81-1) (Heat shock protein
83) {Arabidopsis thaliana}; contains Pfam profiles
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein, PF00183: Hsp90 protein
Length = 705
Score = 27.1 bits (57), Expect = 8.3
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +3
Query: 237 KKKKVSYINHRWR*INKNALKIYLYLP--IT*QSYKTELRNFFFVW 368
KKKK+ ++H W INK I+L P IT + Y ++ W
Sbjct: 253 KKKKIKEVSHEWELINKQK-PIWLRKPEEITKEEYAAFYKSLTNDW 297
>At5g18410.2 68418.m02167 expressed protein similar to p53 inducible
protein [Homo sapiens] GI:5616320
Length = 1017
Score = 27.1 bits (57), Expect = 8.3
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -1
Query: 239 FHNTFLKTIIRLSRSMYTVFYFEYNFFSKYDALVWLVHFVLYCSIVF 99
F +T ++ L M+ V +Y FF + +VWLV +L IVF
Sbjct: 210 FLSTRWAILLNLHVEMFRVN--KYPFFQTFITIVWLVEDILQVLIVF 254
>At5g18410.1 68418.m02166 expressed protein similar to p53 inducible
protein [Homo sapiens] GI:5616320
Length = 1234
Score = 27.1 bits (57), Expect = 8.3
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -1
Query: 239 FHNTFLKTIIRLSRSMYTVFYFEYNFFSKYDALVWLVHFVLYCSIVF 99
F +T ++ L M+ V +Y FF + +VWLV +L IVF
Sbjct: 210 FLSTRWAILLNLHVEMFRVN--KYPFFQTFITIVWLVEDILQVLIVF 254
>At1g24070.1 68414.m03038 glycosyl transferase family 2 protein
similar to beta-(1-3)-glucosyl transferase GB:AAC62210
GI:3687658 from [Bradyrhizobium japonicum], cellulose
synthase from Agrobacterium tumeficiens [gi:710492] and
Agrobacterium radiobacter [gi:710493]; contains Pfam
glycosyl transferase, group 2 family protein domain
PF00535
Length = 552
Score = 27.1 bits (57), Expect = 8.3
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Frame = -1
Query: 233 NTFLKTIIRLSRS----MYTVFYFEYNFFSKYDALVWLVHFVLYCSIVFPYVVF 84
N F K I+ + R+ ++ Y Y+FF +V F+ YC ++ P VF
Sbjct: 360 NLFRKMIMEIIRNKRVTIWKKLYLVYSFFFLRKIIVHCFTFIFYC-VILPTSVF 412
>At1g23480.2 68414.m02946 glycosyl transferase family 2 protein
similar to cellulose synthase from Agrobacterium
tumeficiens [gi:710492] and Agrobacterium radiobacter
[gi:710493]; contains Pfam glycosyl transferase, group 2
family protein domain PF00535 isoform contains GG
acceptor splice site at intron 1
Length = 484
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -1
Query: 197 SMYTVFYFEYNFFSKYDALVWLVHFVLYCSIVFPYVVF 84
S + Y YNFF +V + FV YC I+ V+F
Sbjct: 302 SAWKKLYLIYNFFFIRKIVVHIFTFVFYCLILPTTVLF 339
>At1g23480.1 68414.m02945 glycosyl transferase family 2 protein
similar to cellulose synthase from Agrobacterium
tumeficiens [gi:710492] and Agrobacterium radiobacter
[gi:710493]; contains Pfam glycosyl transferase, group 2
family protein domain PF00535 isoform contains GG
acceptor splice site at intron 1
Length = 556
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -1
Query: 197 SMYTVFYFEYNFFSKYDALVWLVHFVLYCSIVFPYVVF 84
S + Y YNFF +V + FV YC I+ V+F
Sbjct: 374 SAWKKLYLIYNFFFIRKIVVHIFTFVFYCLILPTTVLF 411
>At1g01580.1 68414.m00075 ferric-chelate reductase, putative similar
to ferric-chelate reductase (FRO1) [Pisum sativum]
GI:15341529; contains Pfam profile: PF01794 ferric
reductase like transmembrane component
Length = 725
Score = 27.1 bits (57), Expect = 8.3
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = -1
Query: 179 YFEYNFFSKYDALVWLVHFVLYCSIVFPYV 90
+FE F++ Y +V+++ FVL+ I F ++
Sbjct: 285 FFEVFFYTHYLYIVFMLFFVLHVGISFSFI 314
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,121,601
Number of Sequences: 28952
Number of extensions: 187408
Number of successful extensions: 404
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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