Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1022.Seq
         (499 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    25   0.38 
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    23   1.5  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    21   4.7  
AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory recept...    21   6.2  
AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory recept...    21   6.2  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 25.0 bits (52), Expect = 0.38
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = -3

Query: 212 YLFNFIYIKIFCK*SFVYFYLCIKLFLI-LRCVYKY---LFIY*CI 87
           Y F + +I + C   F Y ++   + L+ L C+Y +   LF   CI
Sbjct: 101 YYFYYAFIILLCVYYFYYAFIIFTVHLLFLLCIYYFVVPLFFLLCI 146



 Score = 24.6 bits (51), Expect = 0.50
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = -3

Query: 212 YLFNFIYIKIFCK*SFVYFYLCIKLFLILRCVYKYLFIY*CII*VAMSFL--PV*KSLSF 39
           Y F ++++   C  +F+ F + +   L +   Y  L I  CI     +F+  P     +F
Sbjct: 259 YYFYYMHLLFCC--AFIIFTMHLLFLLCIYYFYCALIILLCIYYFCRAFIIFPTHFYCAF 316

Query: 38  SFYLLKN 18
           S Y LK+
Sbjct: 317 SLYPLKS 323


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 303 FKVLYIAVRATHRNKPKRNAKLSL 374
           + VL    R TH N+P R AKL L
Sbjct: 343 YGVLEEYTRTTHPNEPGRFAKLLL 366


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 221 FFFYLFNFIYIKIFCK*SFVYFYLCIKLFLI 129
           F F L    Y+KI+ K  +  F   +K F+I
Sbjct: 16  FLFLLICDSYLKIYHKEKYRKFCRILKYFII 46


>AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory receptor
           candidate 29 protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 4/17 (23%), Positives = 12/17 (70%)
 Frame = -3

Query: 227 KVFFFYLFNFIYIKIFC 177
           +++F++ F F+ ++  C
Sbjct: 319 RIYFYWSFGFLIVRTVC 335


>AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory receptor
           candidate 7 protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 4/17 (23%), Positives = 12/17 (70%)
 Frame = -3

Query: 227 KVFFFYLFNFIYIKIFC 177
           +++F++ F F+ ++  C
Sbjct: 319 RIYFYWSFGFLIVRTVC 335


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,910
Number of Sequences: 336
Number of extensions: 1947
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11735024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)