Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1022.Seq
         (499 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens ...    36   0.10 
AK126160-1|BAC86466.1|  203|Homo sapiens protein ( Homo sapiens ...    30   5.1  

>AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45488 fis, clone BRTHA2003759. ).
          Length = 130

 Score = 35.5 bits (78), Expect = 0.10
 Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -3

Query: 218 FFYLFNFIYIKIFCK-*SFVYFYLCIKLFLILRCVYKYLFIY 96
           F Y+F FIYI I+     +VY YL I  F I   +Y Y+FIY
Sbjct: 12  FMYIFIFIYIFIYIYIYVYVYIYLYI-YFYIFTYIYLYIFIY 52



 Score = 35.1 bits (77), Expect = 0.14
 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
 Frame = -3

Query: 239 VFI*KVFFFYLFNFIYIKIFCK*SFVYFYLCIKLFL-----ILRCVYKYLFIY 96
           +FI    F Y++ ++Y+ I+    ++YFY+   ++L     I  C+Y YL+IY
Sbjct: 15  IFIFIYIFIYIYIYVYVYIYL---YIYFYIFTYIYLYIFIYIYICLYIYLYIY 64



 Score = 30.7 bits (66), Expect = 2.9
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -1

Query: 163 YIFIYVSSYF*SFD-VYINIYLFINV*FEWRCPFFLYKNLYLSRFIY 26
           Y++IY+  Y   F  ++I IY+++ V       F+++  +YL  FIY
Sbjct: 6   YVYIYMFMYIFIFIYIFIYIYIYVYVYIYLYIYFYIFTYIYLYIFIY 52


>AK126160-1|BAC86466.1|  203|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44172 fis, clone THYMU2036085. ).
          Length = 203

 Score = 29.9 bits (64), Expect = 5.1
 Identities = 14/54 (25%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
 Frame = -3

Query: 215 FYLFNFIYIKIFCK*SFVYFYLCIKLFL-----ILRCVYKYLFIY*CII*VAMS 69
           F L  F+++  FC   +++FYLC+ ++      +L+ V+ +L +  C+   ++S
Sbjct: 78  FPLSLFVFLISFCFSEYLHFYLCVSVYFSVYLSVLQSVFLFLALRQCLFLSSLS 131


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,064,400
Number of Sequences: 237096
Number of extensions: 822944
Number of successful extensions: 778
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4536472160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)