Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1022.Seq
         (499 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

K01664-1|AAA28872.1|   81|Drosophila melanogaster protein ( D.me...    28   6.1  
BT024287-1|ABC86349.1|  968|Drosophila melanogaster IP13633p pro...    28   6.1  
AE014134-1894|AAF52957.1|  950|Drosophila melanogaster CG5322-PA...    28   6.1  

>K01664-1|AAA28872.1|   81|Drosophila melanogaster protein (
           D.melanogaster Bkm-likeDNA (proximal region X
           chromosome) 5' end, clone CS319.).
          Length = 81

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
 Frame = -1

Query: 166 SYIFIYVSSYF*SF-DVYINIYLFINV*FEWRCPFFLYKNLYLSRF--IY*KIQINL 5
           S+I IY+S Y   +  +Y++IYL I +         +Y ++YLS +  IY  I ++L
Sbjct: 17  SFIGIYLSIYLSIYLSIYLSIYLSIYLCIYLSISLSIYLSIYLSIYLSIYLSIYLSL 73


>BT024287-1|ABC86349.1|  968|Drosophila melanogaster IP13633p
           protein.
          Length = 968

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 232 MNTNVMDCYIDYINDNNKTGTM*NLKYYT*RC 327
           +N   MD  I Y+ND   TG+  N+ Y T  C
Sbjct: 281 VNFKNMDKLIKYVNDRQSTGSQVNVFYSTPSC 312


>AE014134-1894|AAF52957.1|  950|Drosophila melanogaster CG5322-PA
           protein.
          Length = 950

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 232 MNTNVMDCYIDYINDNNKTGTM*NLKYYT*RC 327
           +N   MD  I Y+ND   TG+  N+ Y T  C
Sbjct: 263 VNFKNMDKLIKYVNDRQSTGSQVNVFYSTPSC 294


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,859,284
Number of Sequences: 53049
Number of extensions: 257488
Number of successful extensions: 399
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1763278080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)