Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1022.Seq
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110485-6|CAB60353.1|  193|Caenorhabditis elegans Hypothetical ...    34   0.066
Z68113-1|CAA92151.1|  321|Caenorhabditis elegans Hypothetical pr...    28   3.3  
Z93377-10|CAB07574.2|  321|Caenorhabditis elegans Hypothetical p...    27   7.6  

>AL110485-6|CAB60353.1|  193|Caenorhabditis elegans Hypothetical
           protein Y46G5A.8 protein.
          Length = 193

 Score = 33.9 bits (74), Expect = 0.066
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = -3

Query: 236 FI*KVFFFYLFNFIYIKIFCK*SFVYFYLCIKLFLILRCVYKYLF 102
           F+  +F FY+F+ +++ IF + SF+Y    I L +I   VY + +
Sbjct: 149 FLYALFGFYIFSSLFLSIFVRFSFLYPIFLILLIVIFSIVYLWKY 193


>Z68113-1|CAA92151.1|  321|Caenorhabditis elegans Hypothetical
           protein E03G2.1 protein.
          Length = 321

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -3

Query: 146 IKLFLILRCVYKYLFIY*CII*VAMSFLPV*KSLSFSFYLLKNPNKSC 3
           + LF     +Y Y+++Y   I +A S   +    +  F LL+N  +SC
Sbjct: 79  LPLFCAYIYIYIYIYVYGLYIFIAQSHKQIFSKFNIIFCLLENCARSC 126


>Z93377-10|CAB07574.2|  321|Caenorhabditis elegans Hypothetical
           protein F13A7.2 protein.
          Length = 321

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/36 (27%), Positives = 25/36 (69%)
 Frame = -2

Query: 147 YQVIFDPSMCI*ISIYLLMYNLSGDVLSSCIKIFIF 40
           +Q+++   + + I++Y+L+YN +G  L + +K F++
Sbjct: 12  WQLVYMICLMLYITMYILIYNFTGKTLQT-VKYFLY 46


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,212,132
Number of Sequences: 27780
Number of extensions: 156506
Number of successful extensions: 276
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)