Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1022.Seq
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              21   7.1  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    21   7.1  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    21   7.1  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   9.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.4  

>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 23 SINKTRKIKIFIQEERTSPLK 85
          SINK RKI+    EE    LK
Sbjct: 22 SINKLRKIESVCAEENGIDLK 42


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -2

Query: 345 CFDASPAPLCIVL*ILHCTC 286
           C +  P PLCI +    C C
Sbjct: 54  CPNVVPKPLCIKICAPGCVC 73


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -2

Query: 345 CFDASPAPLCIVL*ILHCTC 286
           C +  P PLCI +    C C
Sbjct: 54  CPNVVPKPLCIKICAPGCVC 73


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
          transporter-1A protein.
          Length = 203

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -1

Query: 79 WRCPFFLYKN 50
          WR P+  YKN
Sbjct: 5  WRFPYLCYKN 14


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
          transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -1

Query: 79 WRCPFFLYKN 50
          WR P+  YKN
Sbjct: 43 WRFPYLCYKN 52


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -1

Query: 79  WRCPFFLYKN 50
           WR P+  YKN
Sbjct: 96  WRFPYLCYKN 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,013
Number of Sequences: 438
Number of extensions: 2305
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)