Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV1020.Seq
(536 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q07020 Cluster: 60S ribosomal protein L18; n=124; Eukar... 109 3e-23
UniRef50_O65729 Cluster: 60S ribosomal protein L18; n=17; Eukary... 109 4e-23
UniRef50_Q4QG98 Cluster: 60S ribosomal protein L18; n=8; Trypano... 99 3e-20
UniRef50_Q7RPR6 Cluster: Eukaryotic ribosomal protein L18, putat... 98 1e-19
UniRef50_A0BXY7 Cluster: Chromosome undetermined scaffold_135, w... 97 3e-19
UniRef50_P07279 Cluster: 60S ribosomal protein L18; n=5; Dikarya... 89 6e-17
UniRef50_Q4N438 Cluster: 60S ribosomal protein L18; n=8; Eukaryo... 89 8e-17
UniRef50_A0ED68 Cluster: Chromosome undetermined scaffold_9, who... 87 3e-16
UniRef50_UPI000050E205 Cluster: 60S ribosomal subunit protein L1... 85 7e-16
UniRef50_A4D0W6 Cluster: Similar to ribosomal protein L18; 60S r... 85 7e-16
UniRef50_UPI0000498BAB Cluster: 60S ribosomal protein L18; n=1; ... 83 4e-15
UniRef50_UPI0000E4A07F Cluster: PREDICTED: similar to ribosomal ... 80 4e-14
UniRef50_Q7QQK8 Cluster: Ribosomal protein L18; n=1; Giardia lam... 79 5e-14
UniRef50_UPI000155D3ED Cluster: PREDICTED: similar to ribosomal ... 70 3e-11
UniRef50_UPI0000F2DC1A Cluster: PREDICTED: similar to ribosomal ... 70 4e-11
UniRef50_A7Q837 Cluster: Chromosome undetermined scaffold_62, wh... 54 2e-06
UniRef50_A5BN99 Cluster: Putative uncharacterized protein; n=1; ... 54 2e-06
UniRef50_Q8SS76 Cluster: 60S RIBOSOMAL PROTEIN L18; n=1; Encepha... 43 0.004
UniRef50_Q8ZYQ2 Cluster: 50S ribosomal protein L18e; n=7; Thermo... 37 0.26
UniRef50_Q98RU3 Cluster: 60s ribosomal protein L18; n=1; Guillar... 36 0.78
UniRef50_UPI0000E4A0C9 Cluster: PREDICTED: similar to tethering ... 34 2.4
UniRef50_UPI0000E4731C Cluster: PREDICTED: hypothetical protein;... 33 3.1
UniRef50_Q4RHJ6 Cluster: Chromosome 19 SCAF15045, whole genome s... 33 3.1
UniRef50_Q580C7 Cluster: Putative uncharacterized protein; n=1; ... 33 4.2
UniRef50_A0RXP6 Cluster: Ribosomal protein L18E; n=2; Thermoprot... 33 5.5
UniRef50_Q1D5Y7 Cluster: Putative methyl-accepting chemotaxis pr... 32 7.3
UniRef50_Q0SUG4 Cluster: CRISPR-associated protein Csx8, putativ... 32 7.3
UniRef50_Q6CXL9 Cluster: Similarity; n=1; Kluyveromyces lactis|R... 32 7.3
UniRef50_A1DA31 Cluster: Putative uncharacterized protein; n=1; ... 32 7.3
UniRef50_P53217 Cluster: Uncharacterized membrane protein YGR026... 32 7.3
UniRef50_Q2RLU7 Cluster: HAD-superfamily hydrolase subfamily IIB... 32 9.6
UniRef50_Q0VR85 Cluster: Putative uncharacterized protein; n=1; ... 32 9.6
UniRef50_Q06035 Cluster: Gag,protease,endonuclease, reverse tran... 32 9.6
>UniRef50_Q07020 Cluster: 60S ribosomal protein L18; n=124;
Eukaryota|Rep: 60S ribosomal protein L18 - Homo sapiens
(Human)
Length = 188
Score = 109 bits (263), Expect = 3e-23
Identities = 52/86 (60%), Positives = 63/86 (73%)
Frame = +2
Query: 242 GDSHNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 421
G +DVR+ ++PK+ V AL VT +AR+RIL AGG+ILTFDQLAL +P G TVL+ G R
Sbjct: 84 GTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPR 143
Query: 422 NAREAARHFGPAPGAPXSHXKPYVRT 499
RE RHFG APG P SH KPYVR+
Sbjct: 144 KGREVYRHFGKAPGTPHSHTKPYVRS 169
Score = 95.9 bits (228), Expect = 5e-19
Identities = 48/84 (57%), Positives = 55/84 (65%)
Frame = +3
Query: 3 DINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISV 182
DI H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP+S+
Sbjct: 4 DIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSL 63
Query: 183 SRLARHMKKPTREGLIAVVVGTVT 254
SR+ R MK P RE AVVVGT+T
Sbjct: 64 SRMIRKMKLPGRENKTAVVVGTIT 87
>UniRef50_O65729 Cluster: 60S ribosomal protein L18; n=17;
Eukaryota|Rep: 60S ribosomal protein L18 - Cicer
arietinum (Chickpea) (Garbanzo)
Length = 183
Score = 109 bits (262), Expect = 4e-23
Identities = 52/82 (63%), Positives = 62/82 (75%)
Frame = +2
Query: 254 NDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNARE 433
+D+R+Y +P + V AL TE ARARI AGGE LTFDQLALR P TVL++G +NARE
Sbjct: 84 DDIRVYDVPTIKVTALKFTETARARIQKAGGECLTFDQLALRLPL-TDTVLLRGPKNARE 142
Query: 434 AARHFGPAPGAPXSHXKPYVRT 499
A +HFGPAPG P SH KPYVR+
Sbjct: 143 AVKHFGPAPGVPHSHTKPYVRS 164
Score = 69.3 bits (162), Expect = 5e-11
Identities = 34/78 (43%), Positives = 50/78 (64%)
Frame = +3
Query: 21 DRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARH 200
++K +RT KS DI T++ FN ++L+RLFMS++NRPP+S+SRL ++
Sbjct: 8 NKKTKRTSPKSNDIYLKLLVKLYRFLVRRTDSNFNAVILKRLFMSKVNRPPLSLSRLIKY 67
Query: 201 MKKPTREGLIAVVVGTVT 254
M+ +EG I VVVG VT
Sbjct: 68 MQ--GKEGKIGVVVGAVT 83
>UniRef50_Q4QG98 Cluster: 60S ribosomal protein L18; n=8;
Trypanosomatidae|Rep: 60S ribosomal protein L18 -
Leishmania major
Length = 198
Score = 99 bits (238), Expect = 3e-20
Identities = 48/83 (57%), Positives = 61/83 (73%)
Frame = +2
Query: 242 GDSHNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 421
GD +DVR+ +IP M V AL ++ AR I+AAGGE LTFDQLA+ APTGK T L++G++
Sbjct: 91 GDVLDDVRMARIPAMRVCALRFSKSARQSIVAAGGECLTFDQLAMIAPTGKNTYLLRGRK 150
Query: 422 NAREAARHFGPAPGAPXSHXKPY 490
+ RE+ RHFG A G P SH KPY
Sbjct: 151 SGRESVRHFG-ASGVPGSHSKPY 172
Score = 41.5 bits (93), Expect = 0.012
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 6/54 (11%)
Frame = +3
Query: 108 TNAKFNQIVLRRLFMSRINRPPISVSRLARHMKK------PTREGLIAVVVGTV 251
T++ FN++V +RL SR NR PIS+SR+A MK+ ++ IAVVVG V
Sbjct: 40 TSSGFNKVVYQRLIKSRSNRAPISLSRIAVVMKRKAVFTAKSKAAPIAVVVGDV 93
>UniRef50_Q7RPR6 Cluster: Eukaryotic ribosomal protein L18,
putative; n=4; Plasmodium (Vinckeia)|Rep: Eukaryotic
ribosomal protein L18, putative - Plasmodium yoelii
yoelii
Length = 243
Score = 97.9 bits (233), Expect = 1e-19
Identities = 48/86 (55%), Positives = 57/86 (66%)
Frame = +2
Query: 242 GDSHNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 421
G +D RL+ M V AL TE AR RI+ AGGE LTFDQLALR PTGK +L++G
Sbjct: 139 GSITDDKRLFSCRNMKVCALRFTETARKRIVDAGGECLTFDQLALRYPTGKDCILLRGPT 198
Query: 422 NAREAARHFGPAPGAPXSHXKPYVRT 499
AR A +HFG APG P S +PYVR+
Sbjct: 199 KARTAEKHFGSAPGRPKSKARPYVRS 224
Score = 46.8 bits (106), Expect = 3e-04
Identities = 21/49 (42%), Positives = 34/49 (69%)
Frame = +3
Query: 108 TNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVGTVT 254
T+ FN+I+ +RL M + RPP+S+S+L +HM + +AVVVG++T
Sbjct: 96 TDVNFNKIIAKRLIMPKRFRPPLSLSKLQQHMS--NNQNSVAVVVGSIT 142
>UniRef50_A0BXY7 Cluster: Chromosome undetermined scaffold_135,
whole genome shotgun sequence; n=3; Eukaryota|Rep:
Chromosome undetermined scaffold_135, whole genome
shotgun sequence - Paramecium tetraurelia
Length = 393
Score = 96.7 bits (230), Expect = 3e-19
Identities = 48/84 (57%), Positives = 58/84 (69%)
Frame = +2
Query: 242 GDSHNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 421
G +D RL +PK+ V AL TE AR RILAAGG+ LTFDQLA + PTG T+L++G +
Sbjct: 300 GTVTDDARLLTVPKLNVCALRFTETARKRILAAGGKTLTFDQLAQQNPTGTGTILLRGPK 359
Query: 422 NAREAARHFGPAPGAPXSHXKPYV 493
REA +HFG A G P SH KPYV
Sbjct: 360 -VREALKHFGRAAGLPGSHAKPYV 382
Score = 43.6 bits (98), Expect = 0.003
Identities = 24/49 (48%), Positives = 31/49 (63%)
Frame = +3
Query: 108 TNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVGTVT 254
T+++FN VLRRL +R R PISVSRL + + + VVVGTVT
Sbjct: 255 TDSQFNATVLRRLQSTRTARYPISVSRLVKQINTAKDKTRTLVVVGTVT 303
>UniRef50_P07279 Cluster: 60S ribosomal protein L18; n=5;
Dikarya|Rep: 60S ribosomal protein L18 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 186
Score = 89.0 bits (211), Expect = 6e-17
Identities = 40/73 (54%), Positives = 54/73 (73%)
Frame = +2
Query: 242 GDSHNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 421
G +D R+++ PK TVAAL T ARA+I+ AGGE +T DQLA+RAP G+ T++++G R
Sbjct: 85 GTVTDDARIFEFPKTTVAALRFTAGARAKIVKAGGECITLDQLAVRAPKGQNTLILRGPR 144
Query: 422 NAREAARHFGPAP 460
N+REA RHFG P
Sbjct: 145 NSREAVRHFGMGP 157
Score = 67.3 bits (157), Expect = 2e-10
Identities = 34/80 (42%), Positives = 47/80 (58%)
Frame = +3
Query: 15 KHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLA 194
+H R RT KS ++ T+A FN++VL+ LF+S+INRPP+SVSR+A
Sbjct: 9 QHKRSGHRTAPKSDNVYLKLLVKLYTFLARRTDAPFNKVVLKALFLSKINRPPVSVSRIA 68
Query: 195 RHMKKPTREGLIAVVVGTVT 254
R +K+ VVVGTVT
Sbjct: 69 RALKQEGAANKTVVVVGTVT 88
>UniRef50_Q4N438 Cluster: 60S ribosomal protein L18; n=8;
Eukaryota|Rep: 60S ribosomal protein L18 - Theileria
parva
Length = 184
Score = 88.6 bits (210), Expect = 8e-17
Identities = 46/87 (52%), Positives = 58/87 (66%), Gaps = 1/87 (1%)
Frame = +2
Query: 242 GDSHNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 421
G ND R+ +PK++V AL VTE AR RILA+GGE+LTFDQL R+PTG + L++G
Sbjct: 83 GTVTNDERMDVVPKLSVCALRVTETARKRILASGGEVLTFDQLVARSPTGSRCTLLRGAT 142
Query: 422 NAREAARHF-GPAPGAPXSHXKPYVRT 499
AREA +HF G P KPYVR+
Sbjct: 143 KAREAVKHFRNEVKGNP----KPYVRS 165
Score = 48.8 bits (111), Expect = 8e-05
Identities = 25/49 (51%), Positives = 36/49 (73%)
Frame = +3
Query: 108 TNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVGTVT 254
T+ FN++VL+RL M R + P+S+S+L++HM+K R AVVVGTVT
Sbjct: 40 TDHSFNKVVLKRLLMPRRFKAPLSLSKLSKHMEK--RPDNTAVVVGTVT 86
>UniRef50_A0ED68 Cluster: Chromosome undetermined scaffold_9, whole
genome shotgun sequence; n=6; Eukaryota|Rep: Chromosome
undetermined scaffold_9, whole genome shotgun sequence -
Paramecium tetraurelia
Length = 469
Score = 86.6 bits (205), Expect = 3e-16
Identities = 47/84 (55%), Positives = 56/84 (66%)
Frame = +2
Query: 242 GDSHNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 421
G +DVRL +PK+ V TE AR RILAAGG+ LTFDQLA + PTG T+L++G R
Sbjct: 380 GTVTDDVRLLTVPKIKV----FTETARKRILAAGGKTLTFDQLAQQNPTGTGTILLRGPR 435
Query: 422 NAREAARHFGPAPGAPXSHXKPYV 493
RE +HFG A G P SH KPYV
Sbjct: 436 -VREELKHFGRAAGLPGSHAKPYV 458
Score = 43.6 bits (98), Expect = 0.003
Identities = 24/49 (48%), Positives = 30/49 (61%)
Frame = +3
Query: 108 TNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVGTVT 254
T++ FN VLRRL +R R PISVSRL + + + VVVGTVT
Sbjct: 335 TDSNFNATVLRRLQQTRTARYPISVSRLVKQINTAKDKTRTLVVVGTVT 383
>UniRef50_UPI000050E205 Cluster: 60S ribosomal subunit protein L18;
n=1; Theileria annulata strain Ankara|Rep: 60S ribosomal
subunit protein L18 - Theileria annulata strain Ankara
Length = 222
Score = 85.4 bits (202), Expect = 7e-16
Identities = 44/83 (53%), Positives = 57/83 (68%), Gaps = 1/83 (1%)
Frame = +2
Query: 254 NDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNARE 433
+D R+ +PK++V AL VTE AR RILA+GGE+LTFDQL R+P G K L++G+ ARE
Sbjct: 125 DDERMDVVPKLSVCALRVTETARKRILASGGEVLTFDQLVARSPIGGKCTLLRGETKARE 184
Query: 434 AARHF-GPAPGAPXSHXKPYVRT 499
A +HF G P KPYVR+
Sbjct: 185 AVKHFRNEVKGNP----KPYVRS 203
Score = 49.2 bits (112), Expect = 6e-05
Identities = 25/51 (49%), Positives = 37/51 (72%)
Frame = +3
Query: 108 TNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVGTVTMT 260
T+ FN+IVL+RL M R + P+S+S+L++HM+ +R AVV+GTVT T
Sbjct: 40 TDFPFNKIVLKRLLMPRRYKAPLSLSKLSKHME--SRPNNTAVVIGTVTST 88
>UniRef50_A4D0W6 Cluster: Similar to ribosomal protein L18; 60S
ribosomal protein L18; n=2; Homo sapiens|Rep: Similar to
ribosomal protein L18; 60S ribosomal protein L18 - Homo
sapiens (Human)
Length = 224
Score = 85.4 bits (202), Expect = 7e-16
Identities = 43/86 (50%), Positives = 55/86 (63%)
Frame = +2
Query: 242 GDSHNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 421
G +DV + ++PK+ V AL VT +AR+ I+ GG+ LTFDQLAL +P TVL+ G R
Sbjct: 120 GTITDDVWVQEVPKLKVCALGVTSRARSHIVRVGGKNLTFDQLALDSPKVCSTVLLSGPR 179
Query: 422 NAREAARHFGPAPGAPXSHXKPYVRT 499
RE HF A G P SH KPYVR+
Sbjct: 180 KGREVYWHFDKALGTPHSHTKPYVRS 205
Score = 38.7 bits (86), Expect = 0.084
Identities = 17/31 (54%), Positives = 23/31 (74%)
Frame = +3
Query: 162 NRPPISVSRLARHMKKPTREGLIAVVVGTVT 254
N+PP+S+SR+ MK P +E AVVVGT+T
Sbjct: 93 NQPPLSLSRMIPKMKLPGQENKTAVVVGTIT 123
>UniRef50_UPI0000498BAB Cluster: 60S ribosomal protein L18; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: 60S ribosomal
protein L18 - Entamoeba histolytica HM-1:IMSS
Length = 168
Score = 83.0 bits (196), Expect = 4e-15
Identities = 37/61 (60%), Positives = 47/61 (77%)
Frame = +2
Query: 269 YKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAARHF 448
Y +PKM V AL T+ A A I AGG+ L FD+LAL+APTG+KTVL++G+RN REA +HF
Sbjct: 90 YPVPKMNVCALKFTKTAEAAITKAGGKCLRFDELALKAPTGRKTVLIRGKRNVREALKHF 149
Query: 449 G 451
G
Sbjct: 150 G 150
Score = 45.2 bits (102), Expect = 0.001
Identities = 29/84 (34%), Positives = 40/84 (47%)
Frame = +3
Query: 3 DINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISV 182
D++ H RK + + T +KF + +L RL +SR+NRP +S
Sbjct: 4 DLDRHHVRKHVSKTARGNNAYMKLLVRLYGFLARRTQSKFAKTILHRLCLSRVNRPIVST 63
Query: 183 SRLARHMKKPTREGLIAVVVGTVT 254
S+LA MKK E AV V TVT
Sbjct: 64 SKLACLMKKHPEE--TAVCVNTVT 85
>UniRef50_UPI0000E4A07F Cluster: PREDICTED: similar to ribosomal
protein L18, partial; n=1; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to ribosomal protein
L18, partial - Strongylocentrotus purpuratus
Length = 354
Score = 79.8 bits (188), Expect = 4e-14
Identities = 35/63 (55%), Positives = 51/63 (80%)
Frame = +2
Query: 254 NDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNARE 433
+DVR++K+PK+ + AL VT +ARARI+ AGGEI+TFDQLAL++P G+ TVL+QG ++ +
Sbjct: 58 DDVRIHKLPKLKICALRVTARARARIIKAGGEIITFDQLALQSPKGQNTVLMQGFKSETD 117
Query: 434 AAR 442
R
Sbjct: 118 MER 120
Score = 62.5 bits (145), Expect = 6e-09
Identities = 30/49 (61%), Positives = 37/49 (75%)
Frame = +3
Query: 108 TNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVGTVT 254
TNAKFN IVL+RLFMSR N+ +S++R+ R M K REG AVVVG +T
Sbjct: 9 TNAKFNNIVLKRLFMSRSNKAAMSLARVVRFMNKDGREGKTAVVVGCIT 57
>UniRef50_Q7QQK8 Cluster: Ribosomal protein L18; n=1; Giardia
lamblia ATCC 50803|Rep: Ribosomal protein L18 - Giardia
lamblia ATCC 50803
Length = 179
Score = 79.4 bits (187), Expect = 5e-14
Identities = 38/78 (48%), Positives = 50/78 (64%)
Frame = +2
Query: 254 NDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNARE 433
ND RL IP+MT+ AL + AR+RI AGG ++FD+L PTG VL+QG+R+ R
Sbjct: 87 NDERLVTIPRMTICALKFSATARSRIEKAGGRCMSFDELLAEKPTGDNCVLLQGRRSCRA 146
Query: 434 AARHFGPAPGAPXSHXKP 487
+ FG +PG P SH KP
Sbjct: 147 VCKKFG-SPGRPNSHVKP 163
Score = 50.0 bits (114), Expect = 3e-05
Identities = 32/77 (41%), Positives = 40/77 (51%)
Frame = +3
Query: 24 RKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARHM 203
RKV R E KS + T F +++ +RL +S+ NRP +SVSRLA M
Sbjct: 12 RKVERKEPKSPNPYIRLLHNAFKVVYENTGEDFTKVLTKRLCLSKTNRPVLSVSRLAHLM 71
Query: 204 KKPTREGLIAVVVGTVT 254
K RE IAVV TVT
Sbjct: 72 HK--REDKIAVVASTVT 86
>UniRef50_UPI000155D3ED Cluster: PREDICTED: similar to ribosomal
protein L18; n=1; Ornithorhynchus anatinus|Rep:
PREDICTED: similar to ribosomal protein L18 -
Ornithorhynchus anatinus
Length = 188
Score = 70.1 bits (164), Expect = 3e-11
Identities = 33/63 (52%), Positives = 41/63 (65%)
Frame = +3
Query: 3 DINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISV 182
DI H DRKVRR E KSQDI TN+ FN++VL+RLFMSR NRPP+++
Sbjct: 113 DIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSSFNKVVLKRLFMSRTNRPPLAL 172
Query: 183 SRL 191
SR+
Sbjct: 173 SRM 175
>UniRef50_UPI0000F2DC1A Cluster: PREDICTED: similar to ribosomal
protein L18; n=1; Monodelphis domestica|Rep: PREDICTED:
similar to ribosomal protein L18 - Monodelphis domestica
Length = 184
Score = 69.7 bits (163), Expect = 4e-11
Identities = 35/84 (41%), Positives = 52/84 (61%)
Frame = +2
Query: 242 GDSHNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 421
G +++R+ +PK+ V+AL VT AR+RIL A G+IL+FDQLA+ +P +G +
Sbjct: 72 GTVTDNIRIQDVPKLKVSALRVTSNARSRILKANGKILSFDQLAMTSP--------KGPQ 123
Query: 422 NAREAARHFGPAPGAPXSHXKPYV 493
+ RH G G+P S+ KPYV
Sbjct: 124 KCYQGYRHLGKVSGSPHSYAKPYV 147
>UniRef50_A7Q837 Cluster: Chromosome undetermined scaffold_62, whole
genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome undetermined scaffold_62, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 421
Score = 54.0 bits (124), Expect = 2e-06
Identities = 29/77 (37%), Positives = 43/77 (55%)
Frame = +3
Query: 24 RKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARHM 203
+K + T KS DI T +KFN + L+R FMS++N+ P+ +SRL R M
Sbjct: 12 KKTKCTAPKSDDIYLKLTVKLYHFLVRKTGSKFNVVTLKRFFMSKVNKLPLLLSRLVRFM 71
Query: 204 KKPTREGLIAVVVGTVT 254
++G I VV+G+VT
Sbjct: 72 --DGKKGKIVVVIGSVT 86
>UniRef50_A5BN99 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 271
Score = 54.0 bits (124), Expect = 2e-06
Identities = 29/77 (37%), Positives = 43/77 (55%)
Frame = +3
Query: 24 RKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARHM 203
+K + T KS DI T +KFN + L+R FMS++N+ P+ +SRL R M
Sbjct: 12 KKTKCTAPKSDDIYLKLTVKLYHFLVRKTGSKFNVVTLKRFFMSKVNKLPLLLSRLVRFM 71
Query: 204 KKPTREGLIAVVVGTVT 254
++G I VV+G+VT
Sbjct: 72 --DGKKGKIVVVIGSVT 86
>UniRef50_Q8SS76 Cluster: 60S RIBOSOMAL PROTEIN L18; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L18
- Encephalitozoon cuniculi
Length = 200
Score = 43.2 bits (97), Expect = 0.004
Identities = 26/78 (33%), Positives = 38/78 (48%)
Frame = +2
Query: 254 NDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNARE 433
+D + IP + V AL ++ + +I GG I T DQL P LV + +R
Sbjct: 91 DDDEVMVIPAVKVVALQWSKGVKEKIERYGGTIGTLDQLFELCPNMDDICLVSTNKFSRR 150
Query: 434 AARHFGPAPGAPXSHXKP 487
+A+ +GPAPG S P
Sbjct: 151 SAKFWGPAPGEKGSTTYP 168
>UniRef50_Q8ZYQ2 Cluster: 50S ribosomal protein L18e; n=7;
Thermoprotei|Rep: 50S ribosomal protein L18e -
Pyrobaculum aerophilum
Length = 122
Score = 37.1 bits (82), Expect = 0.26
Identities = 16/43 (37%), Positives = 27/43 (62%)
Frame = +2
Query: 281 KMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLV 409
K+ VAA+ ++ KA +++ AGGE+LT +L + P G +V
Sbjct: 79 KIIVAAVKISPKAARKVIEAGGEVLTIPELVRKYPRGSGVRIV 121
>UniRef50_Q98RU3 Cluster: 60s ribosomal protein L18; n=1; Guillardia
theta|Rep: 60s ribosomal protein L18 - Guillardia theta
(Cryptomonas phi)
Length = 167
Score = 35.5 bits (78), Expect = 0.78
Identities = 14/56 (25%), Positives = 32/56 (57%)
Frame = +2
Query: 254 NDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 421
ND R+ K PK+ + AL+ + + +I+ GG+I +++ + K + ++G++
Sbjct: 111 NDERISKTPKLKIFALNFSSSVKKKIIENGGQIFKLNEIKVDDFLNMKILFIRGKK 166
>UniRef50_UPI0000E4A0C9 Cluster: PREDICTED: similar to tethering
factor SEC34; n=2; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to tethering factor SEC34 -
Strongylocentrotus purpuratus
Length = 781
Score = 33.9 bits (74), Expect = 2.4
Identities = 17/63 (26%), Positives = 38/63 (60%)
Frame = -2
Query: 454 RAKVTRCLTSISLTLXQYCLLASRSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRY 275
+A+ +CL+ +LTL + + + +Q + K+ +S+S+NA T F+G +S+ ++
Sbjct: 198 QARFKQCLSK-ALTLIKAAVFTILNGATQQVVPKDVTSTSENAFTLFYGKFRSNAPKIKA 256
Query: 274 LVQ 266
L++
Sbjct: 257 LME 259
>UniRef50_UPI0000E4731C Cluster: PREDICTED: hypothetical protein;
n=1; Strongylocentrotus purpuratus|Rep: PREDICTED:
hypothetical protein - Strongylocentrotus purpuratus
Length = 355
Score = 33.5 bits (73), Expect = 3.1
Identities = 17/58 (29%), Positives = 34/58 (58%)
Frame = -2
Query: 373 SQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHVIVTVPTTTAIKPSRVGFFM 200
SQL+ ++ +SS+S A + ++ + H ++ Q +++T+P T+IK G+FM
Sbjct: 177 SQLLAARLYSSTSGIATNYILASDRAKNLH--FIQQGALVLTLPAVTSIKAMCSGYFM 232
>UniRef50_Q4RHJ6 Cluster: Chromosome 19 SCAF15045, whole genome
shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 19
SCAF15045, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 598
Score = 33.5 bits (73), Expect = 3.1
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -2
Query: 460 WSRAKVTRCLTSISLTLXQYCLLASRSTKSQLIKSKNFSSSSQ 332
W K T +I+LT Q+CLL R+T + NF+ SS+
Sbjct: 73 WKYFKYTMAPYTIALTPEQHCLLGLRNTGEHFCSTSNFARSSK 115
>UniRef50_Q580C7 Cluster: Putative uncharacterized protein; n=1;
Trypanosoma brucei|Rep: Putative uncharacterized protein
- Trypanosoma brucei
Length = 350
Score = 33.1 bits (72), Expect = 4.2
Identities = 20/80 (25%), Positives = 36/80 (45%)
Frame = +2
Query: 98 GQTYKCQIQSDRSTPALYEPYQPATNLCVSFGAPHEEANS*GFDCRGSGDSHNDVRLYKI 277
G ++CQ++ R +P++ +T+ CVS + S G + +
Sbjct: 223 GMLHRCQVKRTRVSPSVLHKSPTSTSGCVSSSIQMDSTGSCGVSVGREQSITTQLLPSDV 282
Query: 278 PKMTVAALHVTEKARARILA 337
++ VAA + E+ RAR LA
Sbjct: 283 WEVCVAAKNAEEEVRARALA 302
>UniRef50_A0RXP6 Cluster: Ribosomal protein L18E; n=2;
Thermoprotei|Rep: Ribosomal protein L18E - Cenarchaeum
symbiosum
Length = 126
Score = 32.7 bits (71), Expect = 5.5
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +2
Query: 281 KMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLV 409
K+T+ ++ A ++L++GG + F +L PTGK VL+
Sbjct: 83 KITLCPFGISGAAAEKVLSSGGRVTGFAELTKEFPTGKGVVLL 125
>UniRef50_Q1D5Y7 Cluster: Putative methyl-accepting chemotaxis
protein; n=1; Myxococcus xanthus DK 1622|Rep: Putative
methyl-accepting chemotaxis protein - Myxococcus xanthus
(strain DK 1622)
Length = 519
Score = 32.3 bits (70), Expect = 7.3
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = +3
Query: 324 HAFWLLEEKFLLLISWLFVLR----LARRQYWXKVSEMLVRQRVTLALLQEHRALT 479
H W++ E LLI ++ LA RQ W ++S+ VR RV L+ RALT
Sbjct: 175 HIGWVVFENVFLLIGGRGAVKDARALAARQAWLELSQGEVRTRVVEPLVDSARALT 230
>UniRef50_Q0SUG4 Cluster: CRISPR-associated protein Csx8, putative;
n=1; Clostridium perfringens SM101|Rep:
CRISPR-associated protein Csx8, putative - Clostridium
perfringens (strain SM101 / Type A)
Length = 447
Score = 32.3 bits (70), Expect = 7.3
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = -2
Query: 370 QLIKSKNFSSSSQNACTSFFGNMKSSHRHLRYLVQ 266
+L KS +F +S+N T+ FGNMK S ++ + V+
Sbjct: 220 ELKKSNSFIENSENTRTTLFGNMKESAEYIGFDVE 254
>UniRef50_Q6CXL9 Cluster: Similarity; n=1; Kluyveromyces lactis|Rep:
Similarity - Kluyveromyces lactis (Yeast) (Candida
sphaerica)
Length = 186
Score = 32.3 bits (70), Expect = 7.3
Identities = 12/39 (30%), Positives = 26/39 (66%)
Frame = -1
Query: 218 TSWLLHVARQTRHRDWWPVDTAHKEPA*NDLIEFGICTS 102
+++LL +R + +R+WW VD ++ ++L+E+ I T+
Sbjct: 132 STFLLQGSRDSGNRNWWSVDLGQEQRLQDNLVEWSISTT 170
>UniRef50_A1DA31 Cluster: Putative uncharacterized protein; n=1;
Neosartorya fischeri NRRL 181|Rep: Putative
uncharacterized protein - Neosartorya fischeri (strain
ATCC 1020 / DSM 3700 / NRRL 181)(Aspergillus
fischerianus (strain ATCC 1020 / DSM 3700 / NRRL 181))
Length = 306
Score = 32.3 bits (70), Expect = 7.3
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -1
Query: 194 RQTRHRDWWPVDTAHKEP 141
RQ+ DWWP D HKEP
Sbjct: 179 RQSTKPDWWPSDVPHKEP 196
>UniRef50_P53217 Cluster: Uncharacterized membrane protein YGR026W;
n=4; Saccharomycetales|Rep: Uncharacterized membrane
protein YGR026W - Saccharomyces cerevisiae (Baker's
yeast)
Length = 278
Score = 32.3 bits (70), Expect = 7.3
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 10/102 (9%)
Frame = -2
Query: 523 WAXLFXSLGANIGFXVRAR-----CSWS-----RAKVTRCLTSISLTLXQYCLLASRSTK 374
W LF + N F R SWS R + S S+T+ Q + T
Sbjct: 60 WKWLFLRVNKNYSFIQSKRWYMKLLSWSPQVMYRLSLIGVFMSESVTMQQNWV-GLNPTW 118
Query: 373 SQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHVIVT 248
+ L+ S+NF + AC FFG KS ++ L Y++ S++ +T
Sbjct: 119 NDLLSSENFHTLLI-ACLWFFGGGKSFYKILPYMILSYLHLT 159
>UniRef50_Q2RLU7 Cluster: HAD-superfamily hydrolase subfamily IIB;
n=1; Moorella thermoacetica ATCC 39073|Rep:
HAD-superfamily hydrolase subfamily IIB - Moorella
thermoacetica (strain ATCC 39073)
Length = 272
Score = 31.9 bits (69), Expect = 9.6
Identities = 20/65 (30%), Positives = 28/65 (43%)
Frame = +2
Query: 131 RSTPALYEPYQPATNLCVSFGAPHEEANS*GFDCRGSGDSHNDVRLYKIPKMTVAALHVT 310
RS P E P N A E + GDS+NDV++++ + VA +
Sbjct: 181 RSMPTYLELLNPEVNKARGLQALAELEGISPEEIMVCGDSYNDVQMFRYAGLAVAMANAP 240
Query: 311 EKARA 325
EK RA
Sbjct: 241 EKVRA 245
>UniRef50_Q0VR85 Cluster: Putative uncharacterized protein; n=1;
Alcanivorax borkumensis SK2|Rep: Putative
uncharacterized protein - Alcanivorax borkumensis
(strain SK2 / ATCC 700651 / DSM 11573)
Length = 197
Score = 31.9 bits (69), Expect = 9.6
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Frame = -1
Query: 299 EQPPSSSV----SCTVSRHCDCPHYHGNQTLTSWLLHVARQTRH 180
EQP + +V S+ DCP++H Q L WL H+ + R+
Sbjct: 126 EQPRNITVPLFAEINASKVQDCPYFHYQQQLAQWLHHLDEEARY 169
>UniRef50_Q06035 Cluster: Gag,protease,endonuclease, reverse
transcriptase,RNaseH; n=6; Volvox carteri|Rep:
Gag,protease,endonuclease, reverse transcriptase,RNaseH -
Volvox carteri
Length = 1462
Score = 31.9 bits (69), Expect = 9.6
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 8/52 (15%)
Frame = +3
Query: 117 KFNQIVLRRLFMSRINRPPI--SVSRLARHMKKPTRE------GLIAVVVGT 248
+F +++ L++S RP I SV LARHM KPT E G++ + GT
Sbjct: 1244 RFGELIGSLLYLSVGTRPDIAYSVGALARHMSKPTVEHWQAAKGVVRYIAGT 1295
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 514,891,157
Number of Sequences: 1657284
Number of extensions: 10169275
Number of successful extensions: 28990
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 28065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28960
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 34156095254
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -