Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV1020.Seq
(536 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1667 + 28484069-28484071,28484151-28484240,28484339-284844... 121 4e-28
05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684,317... 119 1e-27
03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892... 101 4e-22
04_01_0249 - 3284107-3286377 30 1.3
06_01_1101 - 9044679-9045320,9045484-9045890,9046020-9046274,904... 29 2.3
11_01_0572 + 4565353-4565535,4566856-4567095,4567922-4568086,456... 29 3.1
02_02_0453 + 10420585-10421661,10422015-10422146,10422232-104224... 27 7.2
09_04_0365 - 16962608-16963174,16963301-16963486,16963824-169638... 27 9.5
09_04_0204 - 15565684-15566223,15567272-15567678,15568143-155684... 27 9.5
09_04_0199 - 15533619-15534107,15534956-15535362,15535559-155358... 27 9.5
07_03_0435 + 18182657-18183509,18184477-18184574,18184663-181848... 27 9.5
>07_03_1667 +
28484069-28484071,28484151-28484240,28484339-28484491,
28484575-28484757,28486137-28486295
Length = 195
Score = 121 bits (291), Expect = 4e-28
Identities = 56/86 (65%), Positives = 68/86 (79%)
Frame = +2
Query: 242 GDSHNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 421
G +D R+Y++P M VAAL TE ARARI+ AGGE LTFDQLALRAP G+ TVL++G +
Sbjct: 91 GTVTDDKRIYEVPAMKVAALRFTETARARIINAGGECLTFDQLALRAPLGQNTVLLRGPK 150
Query: 422 NAREAARHFGPAPGAPXSHXKPYVRT 499
NAREA +HFGPAPG P S+ KPYVR+
Sbjct: 151 NAREAVKHFGPAPGVPHSNTKPYVRS 176
Score = 62.9 bits (146), Expect = 2e-10
Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 6/84 (7%)
Frame = +3
Query: 21 DRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARH 200
++K +RT +S+D+ T + FN ++L+RLFMS+ NRPP+S+ RL R
Sbjct: 11 NKKTKRTAPRSEDVYLKLIVKLYRFLVRRTKSHFNAVILKRLFMSKTNRPPLSMRRLVRF 70
Query: 201 M--KKPTREGL----IAVVVGTVT 254
M K P R + IAV+VGTVT
Sbjct: 71 MEGKVPDRHAISGDQIAVIVGTVT 94
>05_01_0401 +
3169979-3169981,3170071-3170160,3170556-3170684,
3170814-3170999,3172001-3172159
Length = 188
Score = 119 bits (287), Expect = 1e-27
Identities = 57/86 (66%), Positives = 66/86 (76%)
Frame = +2
Query: 242 GDSHNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 421
G +D R+ +IPKM V AL TE ARARI+ AGGE LTFDQLALRAP G+ TVL++G +
Sbjct: 84 GTVTDDKRIQEIPKMKVTALRFTETARARIVNAGGECLTFDQLALRAPLGENTVLLRGPK 143
Query: 422 NAREAARHFGPAPGAPXSHXKPYVRT 499
NAREA RHFG APG P SH KPYVR+
Sbjct: 144 NAREAVRHFGKAPGVPHSHTKPYVRS 169
Score = 64.1 bits (149), Expect = 7e-11
Identities = 32/78 (41%), Positives = 47/78 (60%)
Frame = +3
Query: 21 DRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARH 200
++K +RT +S D+ T + FN ++L+RLFMS+ NRPP+S+ RLA+
Sbjct: 11 NKKTKRTAPRSDDVYLKLLVKLYRFLVRRTKSNFNAVILKRLFMSKTNRPPLSLRRLAKF 70
Query: 201 MKKPTREGLIAVVVGTVT 254
M + E IAV+VGTVT
Sbjct: 71 M-EGKEENNIAVIVGTVT 87
>03_02_0954 -
12687373-12687582,12688885-12689067,12689160-12689288,
12689375-12689464,12689548-12689550
Length = 204
Score = 101 bits (242), Expect = 4e-22
Identities = 55/103 (53%), Positives = 67/103 (65%), Gaps = 17/103 (16%)
Frame = +2
Query: 242 GDSHNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKT------- 400
G +D R+Y++P M VAAL TE ARARI+ GGE LTFDQLALRAP G+ T
Sbjct: 83 GTVTDDKRVYEVPAMKVAALRFTETARARIVNTGGECLTFDQLALRAPLGQNTYIAMPEI 142
Query: 401 ----------VLVQGQRNAREAARHFGPAPGAPXSHXKPYVRT 499
VL++G +NAREA +HFGPAPG P S+ KPYVR+
Sbjct: 143 LTIDNFALLQVLLRGPKNAREAVKHFGPAPGVPHSNTKPYVRS 185
Score = 66.5 bits (155), Expect = 1e-11
Identities = 34/78 (43%), Positives = 47/78 (60%)
Frame = +3
Query: 21 DRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARH 200
++K +RT KS D+ T + FN ++LRRLFMS+ NRPP+S+ RL R
Sbjct: 11 NKKTKRTAPKSDDVYLKLIVKLYRFLVRRTKSPFNAVILRRLFMSKTNRPPLSLRRLVRF 70
Query: 201 MKKPTREGLIAVVVGTVT 254
M+ +E IAV+VGTVT
Sbjct: 71 ME--GKENQIAVIVGTVT 86
>04_01_0249 - 3284107-3286377
Length = 756
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +3
Query: 132 VLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVGTVTMT*DCTRY 278
++RRL +S +N + R+ + KKPTR + + +G + +CTRY
Sbjct: 359 LIRRLIVSDLN-----LFRILDNNKKPTRYRMWSQTIGQYNLLHECTRY 402
>06_01_1101 -
9044679-9045320,9045484-9045890,9046020-9046274,
9046375-9046498,9047237-9047289,9047388-9047648,
9047795-9047848,9047975-9048458,9048554-9048592
Length = 772
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -2
Query: 244 PTTTAIKPSRVGFFMWR-AKRDTEIGGRLIRLIKSR 140
P TTA KP RV F + + K D E+ G L L+++R
Sbjct: 676 PNTTAPKPKRVRFALPKDTKIDREVRGELQELMEAR 711
>11_01_0572 +
4565353-4565535,4566856-4567095,4567922-4568086,
4568612-4568887
Length = 287
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 354 LLLISWLFVLRLARRQYWXKVSEML 428
LL+++WLFV+ RR W +V E+L
Sbjct: 143 LLVLAWLFVIDFGRR-VWGEVDELL 166
>02_02_0453 +
10420585-10421661,10422015-10422146,10422232-10422456,
10422555-10422680,10422777-10422839,10423214-10423296,
10424078-10424309,10424421-10424489,10424532-10424731,
10424819-10424894,10425015-10425081,10425194-10425471,
10425600-10425787,10426235-10426391,10426496-10426741
Length = 1072
Score = 27.5 bits (58), Expect = 7.2
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -1
Query: 278 VSCTVSRHCDCPHYHGN 228
+ C+ S+ C CPHY G+
Sbjct: 1 MGCSPSKVCSCPHYKGS 17
>09_04_0365 -
16962608-16963174,16963301-16963486,16963824-16963896,
16964307-16964497,16964982-16965198,16965394-16965797,
16966593-16966658,16966668-16966721,16966945-16967079,
16967194-16967391,16967734-16967918,16968990-16969527
Length = 937
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -2
Query: 226 KPSRVGFFMWRAKRDTEIG 170
+PS+V FFMW A+R+ G
Sbjct: 899 EPSKVKFFMWLAEREVSHG 917
>09_04_0204 -
15565684-15566223,15567272-15567678,15568143-15568446,
15568735-15570065,15570769-15570846,15570943-15571027
Length = 914
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 354 LLLISWLFVLRLARRQYWXKVSEMLVRQRVTLALLQEHRAL 476
L++I W+FVL + Y +S ML Q++ + H L
Sbjct: 610 LVVIVWVFVLLVITSSYTANLSSMLTVQQLQPTVTDVHELL 650
>09_04_0199 -
15533619-15534107,15534956-15535362,15535559-15535862,
15537061-15538397,15539463-15539727
Length = 933
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 354 LLLISWLFVLRLARRQYWXKVSEMLVRQRVTLALLQEHRAL 476
L++I W+FVL + Y +S ML Q++ + H L
Sbjct: 646 LVVIVWVFVLLVITSSYTANLSSMLTVQQLQPTVTDVHELL 686
>07_03_0435 +
18182657-18183509,18184477-18184574,18184663-18184833,
18185524-18185624,18185702-18185837,18186007-18186057,
18186202-18186489,18186610-18186844,18186924-18187204,
18187336-18187557
Length = 811
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +2
Query: 134 STPALYEPYQPATNLCV-SFGAPHEEANS 217
S PA ++ Y+P+TNL + S+ P+ A+S
Sbjct: 701 SVPAYFQQYEPSTNLILPSYLLPYAAASS 729
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,464,631
Number of Sequences: 37544
Number of extensions: 304864
Number of successful extensions: 870
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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