Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV1020.Seq
(536 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.) 101 3e-22
SB_49884| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.60
SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_3342| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_52387| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_30116| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_41995| Best HMM Match : ANF_receptor (HMM E-Value=0) 27 7.3
SB_15990| Best HMM Match : zf-CCCH (HMM E-Value=4.1) 27 9.7
SB_4198| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
>SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1066
Score = 101 bits (243), Expect = 3e-22
Identities = 49/82 (59%), Positives = 59/82 (71%)
Frame = +2
Query: 230 CRGSGDSHNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLV 409
C G +D R++++P + + AL +E ARARIL AGGEILTFDQLALRAP G+ TVL+
Sbjct: 187 CVVVGSITDDKRIFEVPALKICALRFSETARARILKAGGEILTFDQLALRAPLGQNTVLL 246
Query: 410 QGQRNAREAARHFGPAPGAPXS 475
QG R AREA RH G APG P S
Sbjct: 247 QGPRKAREAERHMGLAPGVPHS 268
Score = 72.5 bits (170), Expect = 2e-13
Identities = 38/84 (45%), Positives = 49/84 (58%)
Frame = +3
Query: 3 DINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISV 182
DI KH +K R E SQ++ TNAKFNQIV++RL MSR RPP+S+
Sbjct: 111 DIEKKHPKKNYRREPVSQNVYIRLLVKLYRFLSRRTNAKFNQIVMKRLCMSRTKRPPLSL 170
Query: 183 SRLARHMKKPTREGLIAVVVGTVT 254
+RL R MK + I VVVG++T
Sbjct: 171 ARLVRKMKASGHKDKICVVVGSIT 194
>SB_49884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 31.1 bits (67), Expect = 0.60
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = -2
Query: 385 RSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRY 275
R+ +S L+ S+N ++QNA T+FF + K H + Y
Sbjct: 16 RANESTLLTSENNDIANQNADTAFFTSKKKRHNNNSY 52
>SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1202
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 344 GEILTFDQLALRAPTGKKTVLVQGQRNAREAARHFGPAPGAPXS 475
GE+++ D++ +A + Q N EA R F P PG P S
Sbjct: 614 GEMMSDDEMKPKARCKRSQSTPIHQENREEAHRPFTPQPGRPLS 657
>SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 173
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 288 RWLLFMLPKKLVHAFWLLEEKFLLLISWLFVLRLARRQYW 407
RWL ++ + L H WL ++L +SWL+ +R W
Sbjct: 19 RWLNYV--RWLYHVRWLYHVRWLYHVSWLYHVRWLYHVRW 56
>SB_3342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 919
Score = 27.9 bits (59), Expect = 5.6
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Frame = -2
Query: 430 TSISLTLXQYCLLASRSTKSQLIKSKNFSSSSQNACTSFFGNMKS-----SHRHLRYLVQ 266
T+ + T ++ S S+ S S + SSSS + +S++ + +H H Y +
Sbjct: 224 TTKTTTANNKIIILSSSSSSSSSSSSSLSSSSSSPLSSYYHHHHHRRHHLNHYHHHYHLD 283
Query: 265 SHVIVTVPTTTAI 227
H I + TT I
Sbjct: 284 DHFIFIIIITTLI 296
>SB_52387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1088
Score = 27.9 bits (59), Expect = 5.6
Identities = 22/84 (26%), Positives = 35/84 (41%)
Frame = -2
Query: 463 SWSRAKVTRCLTSISLTLXQYCLLASRSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRH 284
S ++ R + L + S +T+ + S + A FF N+ H
Sbjct: 686 SHENGEIQRDIDLFMLLARSFASSLSYTTRVAVCFSPGIKKQASLAKLCFFSNISDQHL- 744
Query: 283 LRYLVQSHVIVTVPTTTAIKPSRV 212
LR L+ S V +T TT KP+R+
Sbjct: 745 LRSLL-SVVAMTTNATTTTKPTRM 767
>SB_30116| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 27.5 bits (58), Expect = 7.3
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -2
Query: 301 KSSHRHLRYLVQSHVIVTVPTTTAIKPSRVGFFMWRAKRD 182
KS H + H++VTVP T KP ++ + +R RD
Sbjct: 188 KSGRVHKGLVRSDHLVVTVPPTIPTKP-QIRYVTFRDTRD 226
>SB_41995| Best HMM Match : ANF_receptor (HMM E-Value=0)
Length = 785
Score = 27.5 bits (58), Expect = 7.3
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -1
Query: 242 HYHGNQTLTSWLLHVARQTRHRDWW 168
HYH N+ L +L ++R WW
Sbjct: 342 HYHSNEVLKDYLEMLSRTGPRHGWW 366
>SB_15990| Best HMM Match : zf-CCCH (HMM E-Value=4.1)
Length = 236
Score = 27.1 bits (57), Expect = 9.7
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +2
Query: 29 SSAHRS*ISRYLLEVTCKALQILGQT 106
++ HR ++RY+ TC L + G T
Sbjct: 84 ATCHRQHVTRYMSHATCHTLHVTGNT 109
>SB_4198| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1001
Score = 27.1 bits (57), Expect = 9.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 233 GNQTLTSWLLHVARQTRHRDWWP 165
G T + W LH ++Q RH+ WP
Sbjct: 177 GIDTGSLWQLHYSQQWRHKGRWP 199
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,301,261
Number of Sequences: 59808
Number of extensions: 327852
Number of successful extensions: 920
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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