Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV1020.Seq
(536 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L11566-1|AAA16329.1| 188|Homo sapiens ribosomal protein L18 pro... 109 5e-24
DQ403032-1|ABD77165.1| 164|Homo sapiens ribosomal protein L18 p... 109 5e-24
BC021743-1|AAH21743.1| 188|Homo sapiens ribosomal protein L18 p... 109 5e-24
BC009708-1|AAH09708.1| 188|Homo sapiens ribosomal protein L18 p... 109 5e-24
BC000374-1|AAH00374.1| 188|Homo sapiens ribosomal protein L18 p... 109 5e-24
AB061825-1|BAB79463.1| 188|Homo sapiens ribosomal protein L18 p... 109 5e-24
>L11566-1|AAA16329.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 109 bits (263), Expect = 5e-24
Identities = 52/86 (60%), Positives = 63/86 (73%)
Frame = +2
Query: 242 GDSHNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 421
G +DVR+ ++PK+ V AL VT +AR+RIL AGG+ILTFDQLAL +P G TVL+ G R
Sbjct: 84 GTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPR 143
Query: 422 NAREAARHFGPAPGAPXSHXKPYVRT 499
RE RHFG APG P SH KPYVR+
Sbjct: 144 KGREVYRHFGKAPGTPHSHTKPYVRS 169
Score = 95.9 bits (228), Expect = 8e-20
Identities = 48/84 (57%), Positives = 55/84 (65%)
Frame = +3
Query: 3 DINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISV 182
DI H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP+S+
Sbjct: 4 DIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSL 63
Query: 183 SRLARHMKKPTREGLIAVVVGTVT 254
SR+ R MK P RE AVVVGT+T
Sbjct: 64 SRMIRKMKLPGRENKTAVVVGTIT 87
>DQ403032-1|ABD77165.1| 164|Homo sapiens ribosomal protein L18
protein.
Length = 164
Score = 109 bits (263), Expect = 5e-24
Identities = 52/86 (60%), Positives = 63/86 (73%)
Frame = +2
Query: 242 GDSHNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 421
G +DVR+ ++PK+ V AL VT +AR+RIL AGG+ILTFDQLAL +P G TVL+ G R
Sbjct: 61 GTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPR 120
Query: 422 NAREAARHFGPAPGAPXSHXKPYVRT 499
RE RHFG APG P SH KPYVR+
Sbjct: 121 KGREVYRHFGKAPGTPHSHTKPYVRS 146
Score = 72.5 bits (170), Expect = 9e-13
Identities = 33/49 (67%), Positives = 40/49 (81%)
Frame = +3
Query: 108 TNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVGTVT 254
TN+ FNQ+VL+RLFMSR NRPP+S+SR+ R MK P RE AVVVGT+T
Sbjct: 16 TNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTIT 64
>BC021743-1|AAH21743.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 109 bits (263), Expect = 5e-24
Identities = 52/86 (60%), Positives = 63/86 (73%)
Frame = +2
Query: 242 GDSHNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 421
G +DVR+ ++PK+ V AL VT +AR+RIL AGG+ILTFDQLAL +P G TVL+ G R
Sbjct: 84 GTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPR 143
Query: 422 NAREAARHFGPAPGAPXSHXKPYVRT 499
RE RHFG APG P SH KPYVR+
Sbjct: 144 KGREVYRHFGKAPGTPHSHTKPYVRS 169
Score = 93.9 bits (223), Expect = 3e-19
Identities = 47/84 (55%), Positives = 54/84 (64%)
Frame = +3
Query: 3 DINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISV 182
DI H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP+ +
Sbjct: 4 DIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLCL 63
Query: 183 SRLARHMKKPTREGLIAVVVGTVT 254
SR+ R MK P RE AVVVGT+T
Sbjct: 64 SRMIRKMKLPGRENKTAVVVGTIT 87
>BC009708-1|AAH09708.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 109 bits (263), Expect = 5e-24
Identities = 52/86 (60%), Positives = 63/86 (73%)
Frame = +2
Query: 242 GDSHNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 421
G +DVR+ ++PK+ V AL VT +AR+RIL AGG+ILTFDQLAL +P G TVL+ G R
Sbjct: 84 GTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPR 143
Query: 422 NAREAARHFGPAPGAPXSHXKPYVRT 499
RE RHFG APG P SH KPYVR+
Sbjct: 144 KGREVYRHFGKAPGTPHSHTKPYVRS 169
Score = 95.9 bits (228), Expect = 8e-20
Identities = 48/84 (57%), Positives = 55/84 (65%)
Frame = +3
Query: 3 DINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISV 182
DI H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP+S+
Sbjct: 4 DIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSL 63
Query: 183 SRLARHMKKPTREGLIAVVVGTVT 254
SR+ R MK P RE AVVVGT+T
Sbjct: 64 SRMIRKMKLPGRENKTAVVVGTIT 87
>BC000374-1|AAH00374.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 109 bits (263), Expect = 5e-24
Identities = 52/86 (60%), Positives = 63/86 (73%)
Frame = +2
Query: 242 GDSHNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 421
G +DVR+ ++PK+ V AL VT +AR+RIL AGG+ILTFDQLAL +P G TVL+ G R
Sbjct: 84 GTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPR 143
Query: 422 NAREAARHFGPAPGAPXSHXKPYVRT 499
RE RHFG APG P SH KPYVR+
Sbjct: 144 KGREVYRHFGKAPGTPHSHTKPYVRS 169
Score = 95.9 bits (228), Expect = 8e-20
Identities = 48/84 (57%), Positives = 55/84 (65%)
Frame = +3
Query: 3 DINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISV 182
DI H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP+S+
Sbjct: 4 DIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSL 63
Query: 183 SRLARHMKKPTREGLIAVVVGTVT 254
SR+ R MK P RE AVVVGT+T
Sbjct: 64 SRMIRKMKLPGRENKTAVVVGTIT 87
>AB061825-1|BAB79463.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 109 bits (263), Expect = 5e-24
Identities = 52/86 (60%), Positives = 63/86 (73%)
Frame = +2
Query: 242 GDSHNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 421
G +DVR+ ++PK+ V AL VT +AR+RIL AGG+ILTFDQLAL +P G TVL+ G R
Sbjct: 84 GTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPR 143
Query: 422 NAREAARHFGPAPGAPXSHXKPYVRT 499
RE RHFG APG P SH KPYVR+
Sbjct: 144 KGREVYRHFGKAPGTPHSHTKPYVRS 169
Score = 95.9 bits (228), Expect = 8e-20
Identities = 48/84 (57%), Positives = 55/84 (65%)
Frame = +3
Query: 3 DINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISV 182
DI H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP+S+
Sbjct: 4 DIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSL 63
Query: 183 SRLARHMKKPTREGLIAVVVGTVT 254
SR+ R MK P RE AVVVGT+T
Sbjct: 64 SRMIRKMKLPGRENKTAVVVGTIT 87
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,741,613
Number of Sequences: 237096
Number of extensions: 1660543
Number of successful extensions: 3420
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3420
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5273648886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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