Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1020.Seq
         (536 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021492-6|CAA16387.1|  188|Caenorhabditis elegans Hypothetical ...   129   1e-30
AF098996-1|AAM34815.1|  523|Caenorhabditis elegans Hypothetical ...    30   1.2  
AF016449-17|AAG24005.1|  306|Caenorhabditis elegans Hypothetical...    29   2.1  
U23452-8|AAR12973.1|  231|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U23452-7|AAR12972.1|  366|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U40415-6|AAP68933.1|  329|Caenorhabditis elegans Homolog of yeas...    28   3.7  
U38377-2|AAN72421.1|  199|Caenorhabditis elegans Sox (mammalian ...    27   6.5  
U38377-1|AAA79747.2|  283|Caenorhabditis elegans Sox (mammalian ...    27   6.5  
AL132876-33|CAI79187.1| 1133|Caenorhabditis elegans Hypothetical...    27   8.6  
AL132876-32|CAD56252.2| 1172|Caenorhabditis elegans Hypothetical...    27   8.6  

>AL021492-6|CAA16387.1|  188|Caenorhabditis elegans Hypothetical
           protein Y45F10D.12 protein.
          Length = 188

 Score =  129 bits (311), Expect = 1e-30
 Identities = 58/82 (70%), Positives = 70/82 (85%)
 Frame = +2

Query: 254 NDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNARE 433
           +D RLY +PK++VAALHVTE ARARILAAGGEI+T DQLAL++P G+ TV +QG R+ARE
Sbjct: 88  DDARLYTVPKISVAALHVTEGARARILAAGGEIITLDQLALKSPKGENTVFLQGPRSARE 147

Query: 434 AARHFGPAPGAPXSHXKPYVRT 499
           A +HFGPAPG P SH KPYVR+
Sbjct: 148 AEKHFGPAPGVPHSHTKPYVRS 169



 Score = 70.9 bits (166), Expect = 5e-13
 Identities = 38/84 (45%), Positives = 48/84 (57%)
 Frame = +3

Query: 3   DINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISV 182
           DINHKHDR  RRT  KS++                T  KFN IVL+RL MSR NR P+S+
Sbjct: 4   DINHKHDRVARRTAPKSENPYLRLLSKLYAFLARRTGEKFNAIVLKRLRMSRRNRQPLSL 63

Query: 183 SRLARHMKKPTREGLIAVVVGTVT 254
           ++LAR ++K   E    V + TVT
Sbjct: 64  AKLARAVQKAGNENKTVVTLSTVT 87


>AF098996-1|AAM34815.1|  523|Caenorhabditis elegans Hypothetical
           protein T11F1.7 protein.
          Length = 523

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
 Frame = -2

Query: 406 QYCLLASRSTKSQ---LIKSKNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHVIVTVPTT 236
           +YC      T+SQ   + K +  S+  +N CTS FG++       R+L +   + T+  +
Sbjct: 330 RYCADVYNETESQNTDVCKFQKLSTLKEN-CTSLFGDVVVDANDGRFLYKLFYVGTIFGS 388

Query: 235 TAIKPSRVG--FFMWRAKRDTEIGGRLIRLIK 146
             I+ S++   FF+        + GR +R+ +
Sbjct: 389 LKIQYSKIEGLFFLSNLVTIANLDGRNLRIFR 420


>AF016449-17|AAG24005.1|  306|Caenorhabditis elegans Hypothetical
           protein C50H11.17 protein.
          Length = 306

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +2

Query: 158 YQPATNLCVSFGAPHEEANS*GFDCRGSGDSHN 256
           Y+ A NLC++   P E+ANS  F C   G  HN
Sbjct: 229 YEDAFNLCLNEVKPREDANS--FPCFIDGRFHN 259


>U23452-8|AAR12973.1|  231|Caenorhabditis elegans Hypothetical
           protein R07G3.7b protein.
          Length = 231

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 152 EPYQPATNLCVSFGAPHEEANS*GFDCRGSGDSHNDVRLY 271
           +P +P   L  S    H +A    F+C+GS DS+N  +L+
Sbjct: 64  QPPRPKVTLKSSECLGHNDAGVFCFNCKGSFDSYNQFQLH 103


>U23452-7|AAR12972.1|  366|Caenorhabditis elegans Hypothetical
           protein R07G3.7a protein.
          Length = 366

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 152 EPYQPATNLCVSFGAPHEEANS*GFDCRGSGDSHNDVRLY 271
           +P +P   L  S    H +A    F+C+GS DS+N  +L+
Sbjct: 199 QPPRPKVTLKSSECLGHNDAGVFCFNCKGSFDSYNQFQLH 238


>U40415-6|AAP68933.1|  329|Caenorhabditis elegans Homolog of yeast
           longevity geneprotein 2 protein.
          Length = 329

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = +3

Query: 291 WLLFMLPKKLVHAFWLLEEKFLLLISWLFVLRLARRQYWXKVSEMLVRQRVTLALL 458
           W    +P  +   +W+    ++ L+  +  L   R  +W    +MLV   +TLAL+
Sbjct: 125 WPFHPIPNAVAWYYWIQGGFYIALVFGILFLDAKRSDFW----QMLVHHFITLALI 176


>U38377-2|AAN72421.1|  199|Caenorhabditis elegans Sox (mammalian sry
           box) familyprotein 2, isoform b protein.
          Length = 199

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 119 IQSDRSTPALYEPYQPATNLCVSFGAPHEEANS*GFDCR-GSGDS 250
           + +D S+P+ ++P   +TN   S+  P  E++  G D   G+ DS
Sbjct: 116 VPTDNSSPSQFQPSPMSTNFAGSYLTPKSESSPVGSDSTVGTVDS 160


>U38377-1|AAA79747.2|  283|Caenorhabditis elegans Sox (mammalian sry
           box) familyprotein 2, isoform a protein.
          Length = 283

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 119 IQSDRSTPALYEPYQPATNLCVSFGAPHEEANS*GFDCR-GSGDS 250
           + +D S+P+ ++P   +TN   S+  P  E++  G D   G+ DS
Sbjct: 200 VPTDNSSPSQFQPSPMSTNFAGSYLTPKSESSPVGSDSTVGTVDS 244


>AL132876-33|CAI79187.1| 1133|Caenorhabditis elegans Hypothetical
           protein Y105E8A.26b protein.
          Length = 1133

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/54 (27%), Positives = 21/54 (38%)
 Frame = -1

Query: 398 SSCQSEHEEPADQK*EFLLQQPKCVHELFR*HEEQPPSSSVSCTVSRHCDCPHY 237
           SSC  E  EP DQ  E +     C  +L      +  +      +S   D PH+
Sbjct: 16  SSCIEEEHEPVDQDEEEMYNPSGCTWQLLSVSLHRAANLGFGIAISGGRDNPHF 69


>AL132876-32|CAD56252.2| 1172|Caenorhabditis elegans Hypothetical
           protein Y105E8A.26a protein.
          Length = 1172

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/54 (27%), Positives = 21/54 (38%)
 Frame = -1

Query: 398 SSCQSEHEEPADQK*EFLLQQPKCVHELFR*HEEQPPSSSVSCTVSRHCDCPHY 237
           SSC  E  EP DQ  E +     C  +L      +  +      +S   D PH+
Sbjct: 16  SSCIEEEHEPVDQDEEEMYNPSGCTWQLLSVSLHRAANLGFGIAISGGRDNPHF 69


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,933,490
Number of Sequences: 27780
Number of extensions: 249243
Number of successful extensions: 670
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)