Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1020.Seq
         (536 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     27   0.092
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.65 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.6  
S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    21   6.0  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   8.0  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 27.5 bits (58), Expect = 0.092
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +2

Query: 53  SRYLLEVTCKALQILGQTYKCQIQSDRSTPALYEPYQPA 169
           S Y +  T    Q   QT + Q+  DR++P  Y  Y PA
Sbjct: 394 SLYPMATTSPQSQSTIQTLRPQVSPDRTSPMEYRLYNPA 432


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 24.6 bits (51), Expect = 0.65
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 283  DDGGCSSCYRKSSCTHFGCWRRNSYF*SAGSSCS 384
            +DGGCSS    S+  +   +++N Y     SS S
Sbjct: 924  NDGGCSSLVDVSTPVNKKVYKQNDYIVDESSSSS 957


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 364 SAGSSCSDWQEDSTGXRSAKCS 429
           SAG+SC    E     RSA C+
Sbjct: 26  SAGTSCKWLSEGGNDTRSADCT 47


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -2

Query: 193 AKRDTEIGGRLIRLIKSRRRTI 128
           AK+ T IGG+ + ++KS  +++
Sbjct: 889 AKKATNIGGKPVAVVKSSAQSL 910


>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -1

Query: 290 PSSSVSCTVSRHCDCPH 240
           P+ S+ C   RH   PH
Sbjct: 24  PTMSIKCNCKRHVIKPH 40


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -2

Query: 361 KSKNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHVIVTV 245
           +S   S+  +N   +   N  +SH+HLR  ++  + V V
Sbjct: 103 RSSTSSNDPKNQYKNQNNNHYTSHQHLRTHLRGTLTVNV 141


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,529
Number of Sequences: 438
Number of extensions: 2826
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)