Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV1019.Seq
(588 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa... 31 0.094
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 31 0.16
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch... 28 0.88
SPBC31F10.08 |mde2||Mde2 protein|Schizosaccharomyces pombe|chr 2... 28 0.88
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 28 1.2
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 27 1.5
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 27 2.0
SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomy... 27 2.7
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 3.5
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 26 3.5
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo... 26 3.5
SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr... 26 3.5
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 26 3.5
SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|c... 26 3.5
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 26 4.7
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ... 26 4.7
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce... 26 4.7
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 25 8.2
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom... 25 8.2
SPAC13G6.13 ||SPAC24B11.02|sequence orphan|Schizosaccharomyces p... 25 8.2
>SPBC244.01c |sid4||SIN component scaffold protein Sid4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 31.5 bits (68), Expect = 0.094
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = -2
Query: 467 KISNKENTYKNTKSDAALKNENKNSINKSLNTKANLQNCS---IEKDNFTSEP 318
K +NKENT N S A KN+ +N IN + N A L + S IEK+ S P
Sbjct: 484 KGNNKENTMLNDGSTAPAKNDIRNVINTN-NLDAKLSDESELMIEKNKSYSTP 535
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 30.7 bits (66), Expect = 0.16
Identities = 23/75 (30%), Positives = 36/75 (48%)
Frame = -2
Query: 500 IKSNKKVLKKAKISNKENTYKNTKSDAALKNENKNSINKSLNTKANLQNCSIEKDNFTSE 321
IK VLK+ + S + T++NT ++ L K +++ L K N + D T E
Sbjct: 346 IKRELSVLKQIEFSGEHATHENTSLESQLLKREK-QLSEEL-AKLRSTNAQL-TDRITQE 402
Query: 320 PKCENKLIQKFSDSE 276
K + L QK S+ E
Sbjct: 403 SKKASFLEQKASEQE 417
>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 28.3 bits (60), Expect = 0.88
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = -2
Query: 500 IKSNKKVLKKAKISNKENTYKNTKSDAALKNENK-NSINKS-LNTKANLQNCSIEKDNFT 327
+KS V + ++ + + K+ + N NS+N S L NLQN S D +
Sbjct: 625 LKSQSHVPPRISSNHSDTSVKSNSPSSIFDNSGYLNSLNNSILQMHQNLQNSSNTNDQYK 684
Query: 326 SEPKCENKL 300
+ EN+L
Sbjct: 685 FDSVQENEL 693
>SPBC31F10.08 |mde2||Mde2 protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 209
Score = 28.3 bits (60), Expect = 0.88
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = -2
Query: 494 SNKKVLKKAKISNKENTYKNTKSDAALKNE 405
S K LKKAK N KNTK+D K+E
Sbjct: 48 SESKQLKKAKSRNVTLVDKNTKADKRYKSE 77
>SPBC365.07c |||TATA element modulatory factor homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 27.9 bits (59), Expect = 1.2
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = -2
Query: 416 LKNENKNSINKSLNTKANLQNCSIEKD-NFTSEPKCE-NKLIQKFSDSENNSITSHRMDT 243
L+ EN ++L+ + L E D N S K + K++ ENN T ++DT
Sbjct: 230 LREENDTLAAQNLDLQTQLDRLQRELDTNIRSNVKSKPKKIVTTGGIPENNDYTVGKVDT 289
Query: 242 LKM 234
LK+
Sbjct: 290 LKV 292
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.5 bits (58), Expect = 1.5
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = -2
Query: 488 KKVLKKAKISNKENTYKNTKS-DAALKNENKNSINKSLNTKANLQNCSIEK-DNFTSEP 318
+K+ K A + +E Y + + + L+N NKN+ SL T N I+K NF + P
Sbjct: 9 EKLTKVADVDKRETIYIDLLNYEKQLRNLNKNTREDSLQTNLNPLLSLIKKYGNFIAYP 67
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 27.1 bits (57), Expect = 2.0
Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Frame = -2
Query: 488 KKVLKKAKISNKENTYKNTKSDAALKNE-NKNSINKSLNTKAN--LQNCSIEK-DNFTSE 321
K K AK K++ ++ S+ +L +K S N + ++ + + ++E N +
Sbjct: 419 KPAEKDAKAERKKSGLSSSTSEESLNRHISKRSSNSNDTAPSSHIIADKNLEPTSNIQLK 478
Query: 320 PKCENKLIQ--KFSDSENNSITSHRMDTLKMK 231
+ L++ + SDS+ NS+ S++ TL K
Sbjct: 479 KNPDGNLVETSELSDSDENSVLSNKSSTLSKK 510
>SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 318
Score = 26.6 bits (56), Expect = 2.7
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Frame = -2
Query: 497 KSNKKVLKKAKISNKENTYKN----TKSDAALKNENK 399
K N+KVLKKAK N+ K+ KS ++K +NK
Sbjct: 42 KLNEKVLKKAKSVTTNNSLKSEIKKEKSVPSIKEKNK 78
>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 312
Score = 26.2 bits (55), Expect = 3.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 74 NISMSPSGRLTPSSNILFNTSHLFSCESLDIL 169
N + P+G +TP+ N N H S +LD+L
Sbjct: 263 NAAGHPTGNITPTLNSPNNGIHCHSTSALDLL 294
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 26.2 bits (55), Expect = 3.5
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = -2
Query: 500 IKSNKKVLKKAKISNKENTYKNTKSDAALKNENKNSINKSLNTK 369
++ NKK KKA N + + D +L E S KS K
Sbjct: 110 VRKNKKSSKKASPKNAFDALADDMDDLSLDEEESESSEKSKKKK 153
>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 26.2 bits (55), Expect = 3.5
Identities = 17/70 (24%), Positives = 29/70 (41%)
Frame = -2
Query: 515 MERLLIKSNKKVLKKAKISNKENTYKNTKSDAALKNENKNSINKSLNTKANLQNCSIEKD 336
+ER + NKK + + K+ + T S A L +N + ++ NL N
Sbjct: 34 LERNNKQKNKKSRNQVRREKKKLLREKTNSGAKLAEKNSDDKDQLTENNDNLYNDKKSNG 93
Query: 335 NFTSEPKCEN 306
NF K ++
Sbjct: 94 NFYDTNKTDS 103
>SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 747
Score = 26.2 bits (55), Expect = 3.5
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = -2
Query: 413 KNENKNSINKSLNTKANLQNCSIEKDNFTS 324
K+ +SI + L TK++LQ+ +EK NFTS
Sbjct: 455 KSVPTSSIKEYL-TKSSLQHTIVEKSNFTS 483
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 26.2 bits (55), Expect = 3.5
Identities = 11/46 (23%), Positives = 24/46 (52%)
Frame = -2
Query: 467 KISNKENTYKNTKSDAALKNENKNSINKSLNTKANLQNCSIEKDNF 330
++S +E YK K ++ + + +S N + ++N ++DNF
Sbjct: 1037 QVSKREKAYKQLKQKKLNNAKDAHEMQESKNEETFVRNDVAQEDNF 1082
>SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|chr
1|||Manual
Length = 513
Score = 26.2 bits (55), Expect = 3.5
Identities = 16/66 (24%), Positives = 30/66 (45%)
Frame = -2
Query: 512 ERLLIKSNKKVLKKAKISNKENTYKNTKSDAALKNENKNSINKSLNTKANLQNCSIEKDN 333
ERL + +K + +EN +K +AA +N ++ + N +LQ C ++
Sbjct: 161 ERLTFQLLSNTSEKKTATAEENAFKVGLIEAAAQNLARSLMECPANYMTSLQFCHFAQEL 220
Query: 332 FTSEPK 315
F + K
Sbjct: 221 FQNSSK 226
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 25.8 bits (54), Expect = 4.7
Identities = 15/82 (18%), Positives = 44/82 (53%)
Frame = -2
Query: 473 KAKISNKENTYKNTKSDAALKNENKNSINKSLNTKANLQNCSIEKDNFTSEPKCENKLIQ 294
+++ S++++ ++ SD+ ++ ++ S + S ++ + ++ S + D+ +S E++
Sbjct: 190 ESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESE--S 247
Query: 293 KFSDSENNSITSHRMDTLKMKD 228
DS+++S +S KD
Sbjct: 248 SSEDSDSSSSSSDSESESSSKD 269
>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 25.8 bits (54), Expect = 4.7
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = -2
Query: 452 ENTYKNTKS--DAALKNENKNSINKSLNTKANLQNCSIEKDNFTSEPKCENKLIQKF 288
E K TK + ALK NS N SL++KAN + +K S P+ E + Q F
Sbjct: 23 EQLSKPTKDSVNVALKRRKHNSWNGSLDSKANER----QKVKVFSFPRNETTIAQLF 75
>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 403
Score = 25.8 bits (54), Expect = 4.7
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Frame = -2
Query: 392 INKSLNTKANLQNCSI-EKDNFTSEP-KCE----NKLIQKFSDSENNSITSHRM 249
+ KS++ N S+ E+D++TS P + E NKL+Q +N ITSH +
Sbjct: 246 VEKSIDIDIIQNNLSLLEEDSWTSVPIQGELVELNKLLQHLQLLQNQRITSHNV 299
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 25.0 bits (52), Expect = 8.2
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -2
Query: 491 NKKVLKKAKISNKENTYKNTKSDAALKNENKNSINKSL 378
N++ ++KI E KNTK AA + + + +NKSL
Sbjct: 1359 NERAQNQSKIEQLE--LKNTKLAAAWRTKYEQVVNKSL 1394
>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 986
Score = 25.0 bits (52), Expect = 8.2
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = -2
Query: 416 LKNENKNSINKSLNTKANLQNCS-IEKDNFTSEPKCENKLIQ-KFSDSENNSI 264
L++ N+NSIN SL+ L + S +E+ F P+ + L Q FS N+S+
Sbjct: 137 LQSTNENSINASLDVLDELVDESLVEEQFFIIAPQLASILYQFIFSAPPNDSM 189
>SPAC13G6.13 ||SPAC24B11.02|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 115
Score = 25.0 bits (52), Expect = 8.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 473 KAKISNKENTYKNTKSDAALKNENK 399
K K S K N YK KSD +++ NK
Sbjct: 30 KYKESKKINVYKRKKSDEVVEDCNK 54
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,882,627
Number of Sequences: 5004
Number of extensions: 31547
Number of successful extensions: 139
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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