Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV1019.Seq
(588 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0634 - 19132916-19134033,19134716-19135915,19136002-191361... 33 0.22
04_01_0587 + 7654490-7655095,7655162-7655512,7655911-7656423 29 3.6
02_04_0201 - 20869057-20869361,20869506-20869922,20870184-20870544 29 3.6
06_03_0401 + 20424932-20425847,20425908-20426144,20426184-204262... 28 4.8
01_06_0036 + 25786530-25786756,25788000-25788076,25788538-257886... 28 4.8
11_01_0779 + 6518556-6518601,6519825-6519967,6520091-6520114,652... 28 6.3
06_03_0478 - 21259376-21259465,21259862-21259924,21260025-212600... 28 6.3
06_02_0280 - 13708651-13708839,13708895-13709164,13709889-137104... 28 6.3
05_03_0632 - 16404169-16405043,16405248-16405983,16406113-164065... 28 6.3
02_02_0061 + 6468190-6471046,6471318-6471736 28 6.3
08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,452... 27 8.4
06_03_0073 + 16229369-16230115,16230182-16230431,16230618-162307... 27 8.4
04_04_0483 - 25554531-25554605,25554681-25555644,25555722-255558... 27 8.4
>09_04_0634 -
19132916-19134033,19134716-19135915,19136002-19136106,
19136273-19136315,19137622-19137740,19138074-19138172,
19138264-19138480
Length = 966
Score = 32.7 bits (71), Expect = 0.22
Identities = 19/68 (27%), Positives = 32/68 (47%)
Frame = -2
Query: 494 SNKKVLKKAKISNKENTYKNTKSDAALKNENKNSINKSLNTKANLQNCSIEKDNFTSEPK 315
S K K NK+ +Y + + KN+ +++ +K +NT N N E+ N T +P
Sbjct: 798 SAKTECKSDNADNKKQSYDTSTEEMNAKNQAQDTSSKEMNTIQNTSNA--EEKNQTEDPA 855
Query: 314 CENKLIQK 291
+ QK
Sbjct: 856 VQEGNKQK 863
>04_01_0587 + 7654490-7655095,7655162-7655512,7655911-7656423
Length = 489
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 177 VIDKISNDSHENKCDVLNKIFDDGVKRPDGDIEIFES 67
+I+K+ + K D+L K DD KRP G ++ +S
Sbjct: 198 LIEKMETELLAAKLDLLMKQLDDHEKRPQGTVKALDS 234
>02_04_0201 - 20869057-20869361,20869506-20869922,20870184-20870544
Length = 360
Score = 28.7 bits (61), Expect = 3.6
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -2
Query: 461 SNKENTYKNTKSDAALKNENKNSINKSLNTKANLQNCSIEKDNFT-SEPKCENKL 300
+N EN K T + KN+ I + L NL+N S+ +NFT S P C L
Sbjct: 216 NNLENLTKLTVL-SLYKNQLSGHIPQELGYLVNLKNLSLYSNNFTGSIPNCLGNL 269
>06_03_0401 +
20424932-20425847,20425908-20426144,20426184-20426262,
20426308-20427220
Length = 714
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 141 KCDVLNKIFDDGVKRPDGDIEIFES 67
K D+L K FDD KRP G ++ +S
Sbjct: 232 KLDLLMKRFDDHEKRPQGTVKALDS 256
>01_06_0036 +
25786530-25786756,25788000-25788076,25788538-25788625,
25788706-25788786,25788866-25788940,25789048-25789149,
25789589-25789726,25791559-25791585,25791696-25791786,
25792423-25792584
Length = 355
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 508 LSIYHIWISRGLLSILNWXXNFYYYY 585
L+IY I + G L +L+W YYY+
Sbjct: 88 LTIYAILLMPGFLQVLSWFTVGYYYF 113
>11_01_0779 +
6518556-6518601,6519825-6519967,6520091-6520114,
6520140-6520286,6521957-6522142,6522232-6522490,
6522738-6522969,6523081-6523231,6523322-6523499,
6523916-6524191,6524414-6524642,6524754-6524904,
6525013-6525192
Length = 733
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -2
Query: 431 KSDAALKNENKNSINKSLNTKANLQNCSIEKDNFTSEPKCEN 306
KS + NK+ I L +K LQ+ DNF SE E+
Sbjct: 71 KSGEFSRQNNKSEIKSQLTSKPTLQSSQGITDNFPSEQDFEH 112
>06_03_0478 - 21259376-21259465,21259862-21259924,21260025-21260066,
21260180-21260461,21261084-21261587,21261973-21261981,
21262122-21262196,21262375-21262449,21262557-21263494,
21263577-21263607,21263694-21263979,21264691-21264905,
21265329-21265437,21265556-21265611,21265730-21265822,
21266348-21266393,21266496-21267221,21267489-21267550,
21267738-21268013,21268604-21268735,21268835-21268909
Length = 1394
Score = 27.9 bits (59), Expect = 6.3
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Frame = -2
Query: 497 KSNKKVLKKAKISNKENTYKNTKSDAALKNENKNSINKSLNTKANLQNCSIEKDNFTSEP 318
KSN +K+ ++ +++ ++ K+D A ++ K S ++ ++K + EK P
Sbjct: 940 KSNGDKIKQQEVLKQKDIKQDGKNDKAKDDKEKKSRDQKTDSKQKSLTDTKEKKKSDEPP 999
Query: 317 KCENKLIQ-KFSDSENNSITSHRMDTL 240
K ++Q K S TS +D L
Sbjct: 1000 KHPGFILQAKRSKDSKVRSTSLSLDGL 1026
>06_02_0280 -
13708651-13708839,13708895-13709164,13709889-13710476,
13710511-13710686,13710897-13711029,13711193-13711462,
13711521-13711889
Length = 664
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 141 KCDVLNKIFDDGVKRPDGDIEIFES 67
K D+L K+ DD KRP G I+ +S
Sbjct: 138 KLDLLMKLLDDHDKRPQGTIKALDS 162
>05_03_0632 -
16404169-16405043,16405248-16405983,16406113-16406512,
16406717-16406727
Length = 673
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 141 KCDVLNKIFDDGVKRPDGDIEIFES 67
K D+L K DD KRP G+++ ES
Sbjct: 255 KLDLLMKRLDDHEKRPQGNVKALES 279
>02_02_0061 + 6468190-6471046,6471318-6471736
Length = 1091
Score = 27.9 bits (59), Expect = 6.3
Identities = 18/65 (27%), Positives = 35/65 (53%)
Frame = -2
Query: 515 MERLLIKSNKKVLKKAKISNKENTYKNTKSDAALKNENKNSINKSLNTKANLQNCSIEKD 336
ME + + SNK + +I ++ + +N ++ +N SI + + ANL+ +E++
Sbjct: 91 MENIWLYSNKL---QGQIPSEFGSLQNLQALVLGENRLTGSIPSFIGSLANLKFLILEEN 147
Query: 335 NFTSE 321
NFT E
Sbjct: 148 NFTGE 152
>08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,
4521632-4521723,4522226-4522342,4522641-4522704,
4523175-4523228,4523579-4523666,4523788-4524023,
4525258-4525478,4525634-4525827,4525938-4525995,
4526771-4526824,4526851-4527473,4527580-4527640,
4528417-4528590,4528803-4529063,4529201-4529320,
4529388-4530022,4530062-4530828,4530915-4531012,
4531101-4531155,4531230-4531318
Length = 2010
Score = 27.5 bits (58), Expect = 8.4
Identities = 19/46 (41%), Positives = 24/46 (52%)
Frame = -2
Query: 485 KVLKKAKISNKENTYKNTKSDAALKNENKNSINKSLNTKANLQNCS 348
KVLKK I+N +TYK+ K + N SL A L+NCS
Sbjct: 1060 KVLKKRIIANTNSTYKSPKQMSKPHNHILPVKLHSLKA-AVLENCS 1104
>06_03_0073 +
16229369-16230115,16230182-16230431,16230618-16230728,
16230768-16231153
Length = 497
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -1
Query: 177 VIDKISNDSHENKCDVLNKIFDDGVKRPDGDIEIFES 67
+I+K+ + K D+L K DD KRP G ++ ++
Sbjct: 245 LIEKMDTELLAAKLDLLMKRLDDHEKRPQGTVKALDT 281
>04_04_0483 -
25554531-25554605,25554681-25555644,25555722-25555847,
25556162-25556331,25556431-25556526
Length = 476
Score = 27.5 bits (58), Expect = 8.4
Identities = 20/57 (35%), Positives = 25/57 (43%)
Frame = -2
Query: 497 KSNKKVLKKAKISNKENTYKNTKSDAALKNENKNSINKSLNTKANLQNCSIEKDNFT 327
K K AK SNKEN K A +NSI K ++ A+L + DN T
Sbjct: 310 KEVKAQAAPAKKSNKENVNSVPKVGAT----PENSIKKEVSVDASLSTWLVSSDNST 362
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,198,339
Number of Sequences: 37544
Number of extensions: 144860
Number of successful extensions: 425
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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