Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1019.Seq
         (588 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   5.1  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   6.8  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              21   9.0  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = -2

Query: 422 AALKNENKNSINKSLNTKANLQNCSIEK 339
           + +++ +KN     L+ K+++QN S+ K
Sbjct: 564 STIEDADKNQCRHYLDAKSSVQNYSLAK 591


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 10/42 (23%), Positives = 22/42 (52%)
 Frame = -2

Query: 440 KNTKSDAALKNENKNSINKSLNTKANLQNCSIEKDNFTSEPK 315
           KN+++    +   K ++N     + N+Q CS   ++++S  K
Sbjct: 627 KNSENSIMQRASMKENLNVYPEFQENVQLCSEISESYSSNNK 668


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -1

Query: 177 VIDKISNDSHENKCDVLNKIFDD 109
           V+D+  N + +N  D++  + DD
Sbjct: 72  VVDENGNFNEKNTRDIVQAVLDD 94


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,305
Number of Sequences: 438
Number of extensions: 2034
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)