Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1018.Seq
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyc...   106   2e-24
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-...    25   5.6  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    25   7.3  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    25   7.3  

>SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 126

 Score =  106 bits (254), Expect = 2e-24
 Identities = 49/89 (55%), Positives = 69/89 (77%), Gaps = 1/89 (1%)
 Frame = -2

Query: 484 MKFNKQVTSSXRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 305
           MKF++ VTSS RK RK HF APS +RRVLMS+PLSKELR+++ ++S+P+R+DD++ V+RG
Sbjct: 1   MKFSRDVTSSRRKQRKAHFGAPSSVRRVLMSAPLSKELREQYKIRSLPVRRDDQITVIRG 60

Query: 304 HYKGQQVGKVMQVYRKNLLYTL-RGFKEK 221
             KG++ GK+  VYRK  L  + R  +EK
Sbjct: 61  SNKGRE-GKITSVYRKKFLLLIERVTREK 88



 Score = 56.8 bits (131), Expect = 2e-09
 Identities = 27/46 (58%), Positives = 36/46 (78%)
 Frame = -1

Query: 257 KFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRR 120
           KF++ IER+ REKANGA+A VGI  SK VI KL ++KDRK ++ R+
Sbjct: 76  KFLLLIERVTREKANGASAPVGIDASKVVITKLHLDKDRKDLIVRK 121


>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
           [UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -1

Query: 197 VGIHPSKCV-IVKLKMNKDRKAILDRRAKGRLAALGKDKGKY 75
           +GI P K    +K  + KDR A ++RR +G    +G D+  Y
Sbjct: 256 IGIDPEKFSDALKSDVVKDRIASIERRLQGVKVIVGVDRLDY 297


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 198 ICCCTIGLFSLNPLNVYNKFL 260
           + C +I LFS  PL+  N+FL
Sbjct: 825 LTCISIPLFSFEPLSKKNRFL 845


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +3

Query: 75  VFTLVFAKCSQSALCSAIEDCFAVFIH 155
           +F LV    S   +C  IED F   IH
Sbjct: 588 LFNLVATNASDPYICGIIEDTFEDIIH 614


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,080,757
Number of Sequences: 5004
Number of extensions: 41432
Number of successful extensions: 127
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)