Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV1018.Seq
(548 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0263 + 2136858-2137331 111 4e-25
12_01_0323 - 2459854-2460306 111 5e-25
11_01_0317 - 2365493-2365786,2365825-2365953 81 4e-16
06_03_1161 - 28089177-28089359,28089473-28089700,28089776-280898... 28 4.3
04_04_1041 - 30329037-30329102,30329199-30329352,30329606-303297... 28 5.6
12_02_0996 - 25115643-25115708,25115869-25116107,25116484-251165... 27 7.5
>01_01_0263 + 2136858-2137331
Length = 157
Score = 111 bits (267), Expect = 4e-25
Identities = 57/89 (64%), Positives = 72/89 (80%), Gaps = 1/89 (1%)
Frame = -2
Query: 484 MKFNKQVTSSXRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 305
MK N +VTSS RK RK HF+APS +RRVLMS+ LS ELR K+NV+S+PIRKDDEVQVVRG
Sbjct: 1 MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSSELRHKYNVRSIPIRKDDEVQVVRG 60
Query: 304 HYKGQQVGKVMQVYRKN-LLYTLRGFKEK 221
YKG++ GKV+QVYR+ +++ R +EK
Sbjct: 61 SYKGRE-GKVVQVYRRRWVIHVERITREK 88
Score = 82.2 bits (194), Expect = 2e-16
Identities = 38/61 (62%), Positives = 50/61 (81%)
Frame = -1
Query: 257 KFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGKDKGK 78
++V+++ERI REK NG+T VGIHPSK V+ KLK++KDRKAILDR+A+GR A K KGK
Sbjct: 76 RWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILDRKARGR--AADKAKGK 133
Query: 77 Y 75
+
Sbjct: 134 F 134
>12_01_0323 - 2459854-2460306
Length = 150
Score = 111 bits (266), Expect = 5e-25
Identities = 57/89 (64%), Positives = 72/89 (80%), Gaps = 1/89 (1%)
Frame = -2
Query: 484 MKFNKQVTSSXRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 305
MK N +VTSS RK RK HF+APS +RRVLMS+ LS ELR K+NV+S+PIRKDDEVQVVRG
Sbjct: 1 MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYNVRSIPIRKDDEVQVVRG 60
Query: 304 HYKGQQVGKVMQVYRKN-LLYTLRGFKEK 221
YKG++ GKV+QVYR+ +++ R +EK
Sbjct: 61 SYKGRE-GKVVQVYRRRWVIHVERITREK 88
Score = 81.4 bits (192), Expect = 4e-16
Identities = 38/61 (62%), Positives = 49/61 (80%)
Frame = -1
Query: 257 KFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGKDKGK 78
++V+++ERI REK NG+T VGIHPSK V+ KLK++KDRKAILDR+A GR A K KGK
Sbjct: 76 RWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILDRKASGR--AADKAKGK 133
Query: 77 Y 75
+
Sbjct: 134 F 134
>11_01_0317 - 2365493-2365786,2365825-2365953
Length = 140
Score = 81.4 bits (192), Expect = 4e-16
Identities = 38/61 (62%), Positives = 49/61 (80%)
Frame = -1
Query: 257 KFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGKDKGK 78
++V+++ERI REK NG+T VGIHPSK V+ KLK++KDRKAILDR+A GR A K KGK
Sbjct: 63 RWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILDRKASGR--AADKAKGK 120
Query: 77 Y 75
+
Sbjct: 121 F 121
Score = 73.7 bits (173), Expect = 9e-14
Identities = 46/89 (51%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
Frame = -2
Query: 484 MKFNKQVTSSXRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 305
MK N +VTSS RK RK HF+APS +RRVLMS+ LS ELR K+N VVRG
Sbjct: 1 MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYN-------------VVRG 47
Query: 304 HYKGQQVGKVMQVYRKN-LLYTLRGFKEK 221
YKG++ GKV+QVYR+ +++ R +EK
Sbjct: 48 SYKGRE-GKVVQVYRRRWVIHVERITREK 75
>06_03_1161 -
28089177-28089359,28089473-28089700,28089776-28089814,
28090681-28090737,28090924-28091046
Length = 209
Score = 28.3 bits (60), Expect = 4.3
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Frame = -2
Query: 481 KFNKQVTSSXRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPI------RKDDEV 320
+F + ++S + ++F I+ + L + R+K S+P+ R D V
Sbjct: 42 EFRLRTSTSQQPTLCQNFVVKFMIKTCPIQMRLKRWERKKCKPNSLPVLHKMHVRIGDTV 101
Query: 319 QVVRGHYKGQQVGKVMQVYRKN 254
QV+ G KG +VG+V ++++ N
Sbjct: 102 QVIAGREKG-KVGEVTRLFKHN 122
>04_04_1041 -
30329037-30329102,30329199-30329352,30329606-30329733,
30329918-30330043,30330545-30330675,30331091-30331304,
30332056-30332061,30332216-30332246,30332410-30332867,
30332992-30333136,30333255-30333712,30336945-30337085,
30337146-30337158,30337611-30337636
Length = 698
Score = 27.9 bits (59), Expect = 5.6
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Frame = -1
Query: 323 SSGCTWTLQRST---GWQSDAGVS*KFVVYIERIQRE 222
+S TW + RS GWQ DAG S +I+ I+ E
Sbjct: 132 TSMATWDMTRSKSNRGWQQDAGRSPGGTTWIQSIEEE 168
>12_02_0996 -
25115643-25115708,25115869-25116107,25116484-25116577,
25116726-25116864,25116960-25117081,25117261-25117491,
25117583-25117644,25118335-25118461,25118890-25119183,
25119266-25119622
Length = 576
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/49 (26%), Positives = 21/49 (42%)
Frame = -3
Query: 198 CRHSPFKVCDCQVEDE*RPQSNPRSQSKGQTGCTWQRQG*IHRGNCHSH 52
C H+ K C C + E + Q+ R + Q ++ I R HS+
Sbjct: 479 CNHNYMKQCKCSIAQEPQLQARARQNAASQQSQLHEKGRQIDRSAVHSN 527
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,533,397
Number of Sequences: 37544
Number of extensions: 266599
Number of successful extensions: 649
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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