Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1018.Seq
         (548 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    27   0.41 
AY752905-1|AAV30079.1|  100|Anopheles gambiae peroxidase 11 prot...    27   0.54 
AY334004-1|AAR01129.1|  194|Anopheles gambiae integrin protein.        25   1.2  
AY334003-1|AAR01128.1|  194|Anopheles gambiae integrin protein.        25   1.2  
AY334002-1|AAR01127.1|  194|Anopheles gambiae integrin protein.        25   1.2  
AY334001-1|AAR01126.1|  194|Anopheles gambiae integrin protein.        25   1.2  
AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin s...    25   1.2  
AJ439060-16|CAD27767.1|  278|Anopheles gambiae hypothetical prot...    25   1.6  
AY081778-1|AAL91655.1|  507|Anopheles gambiae cytochrome P450 pr...    24   2.9  
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    24   2.9  
AF487537-1|AAL93298.1|  507|Anopheles gambiae cytochrome P450 CY...    24   3.8  
AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.            23   5.0  

>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
            channel alpha subunitprotein.
          Length = 2139

 Score = 27.1 bits (57), Expect = 0.41
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = +2

Query: 233  SSQCIQQIFTIHLHHFA---NLLTFVVSTYNLNFIVFAN 340
            SS+C+ +IF +  H+F    NL  FVV   ++  +V ++
Sbjct: 1667 SSECLMKIFALRYHYFIEPWNLFDFVVVILSILGLVLSD 1705


>AY752905-1|AAV30079.1|  100|Anopheles gambiae peroxidase 11
           protein.
          Length = 100

 Score = 26.6 bits (56), Expect = 0.54
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 308 TYNLNFIVFANRHGFYIEFLS*FLRQGRGHQHSPY 412
           T+ L  ++FA R+ F  +  S  +++GR H   PY
Sbjct: 27  TFGLTRLLFAGRNPFGSDLASLNIQRGRDHALRPY 61


>AY334004-1|AAR01129.1|  194|Anopheles gambiae integrin protein.
          Length = 194

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
 Frame = +3

Query: 36  CLRGLHGCG-SFLGVFTLVFAKCSQSALCSAIEDCFAVFIH 155
           C  G   C  SF G F        Q ALCS+ EDC    +H
Sbjct: 42  CNCGRCSCDESFFGPFCET-KDGEQPALCSSYEDCIRCAVH 81


>AY334003-1|AAR01128.1|  194|Anopheles gambiae integrin protein.
          Length = 194

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
 Frame = +3

Query: 36  CLRGLHGCG-SFLGVFTLVFAKCSQSALCSAIEDCFAVFIH 155
           C  G   C  SF G F        Q ALCS+ EDC    +H
Sbjct: 42  CNCGRCSCDESFFGPFCET-KDGEQPALCSSYEDCIRCAVH 81


>AY334002-1|AAR01127.1|  194|Anopheles gambiae integrin protein.
          Length = 194

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
 Frame = +3

Query: 36  CLRGLHGCG-SFLGVFTLVFAKCSQSALCSAIEDCFAVFIH 155
           C  G   C  SF G F        Q ALCS+ EDC    +H
Sbjct: 42  CNCGRCSCDESFFGPFCET-KDGEQPALCSSYEDCIRCAVH 81


>AY334001-1|AAR01126.1|  194|Anopheles gambiae integrin protein.
          Length = 194

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
 Frame = +3

Query: 36  CLRGLHGCG-SFLGVFTLVFAKCSQSALCSAIEDCFAVFIH 155
           C  G   C  SF G F        Q ALCS+ EDC    +H
Sbjct: 42  CNCGRCSCDESFFGPFCET-KDGEQPALCSSYEDCIRCAVH 81


>AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin
           subunit AgBnu protein.
          Length = 803

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
 Frame = +3

Query: 36  CLRGLHGCG-SFLGVFTLVFAKCSQSALCSAIEDCFAVFIH 155
           C  G   C  SF G F        Q ALCS+ EDC    +H
Sbjct: 618 CNCGRCSCDESFFGPFCET-KDGEQPALCSSYEDCIRCAVH 657


>AJ439060-16|CAD27767.1|  278|Anopheles gambiae hypothetical protein
           protein.
          Length = 278

 Score = 25.0 bits (52), Expect = 1.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 383 QGRGHQHSPYM*RSTEMPLPVFPS*G 460
           Q  GH HS    +S  +P+PVF   G
Sbjct: 150 QAAGHLHSSVSEKSKTVPVPVFQKVG 175


>AY081778-1|AAL91655.1|  507|Anopheles gambiae cytochrome P450
           protein.
          Length = 507

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 354 TLNFCLSSLDRGEDINTRL 410
           T+NFCL  L +  DI  RL
Sbjct: 319 TMNFCLYELAKNPDIQGRL 337


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 15/69 (21%), Positives = 37/69 (53%)
 Frame = -2

Query: 382  SKELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMQVYRKNLLYTLRGFKEKRPMVQQ 203
            SKEL+ K++ +   ++++DE++ +    K  ++ KV     K+    + G ++K P + +
Sbjct: 884  SKELKAKYHQRDKLLKQNDELK-LEIKKKENEITKVRN-ENKDGYDRISGMEQKYPWIPE 941

Query: 202  HMSAFTLQS 176
                F +++
Sbjct: 942  DKEFFGVKN 950


>AF487537-1|AAL93298.1|  507|Anopheles gambiae cytochrome P450
           CYP6P2 protein.
          Length = 507

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 354 TLNFCLSSLDRGEDINTRL 410
           T+NFCL  L +  DI  RL
Sbjct: 320 TMNFCLYELAKHPDIQERL 338


>AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.
          Length = 1356

 Score = 23.4 bits (48), Expect = 5.0
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 210 CNSICRHSPFKVCDCQVE 157
           C ++C    F  CDC++E
Sbjct: 740 CFALCHCCDFYACDCKME 757


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 535,261
Number of Sequences: 2352
Number of extensions: 11009
Number of successful extensions: 29
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 50881347
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)