Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1018.Seq
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68315-10|CAD59149.1|  109|Caenorhabditis elegans Hypothetical p...    89   2e-18
Z68315-9|CAA92678.1|  106|Caenorhabditis elegans Hypothetical pr...    89   2e-18
Z68315-8|CAA92674.1|  142|Caenorhabditis elegans Hypothetical pr...    89   2e-18
AC006674-1|AAK68390.1|  388|Caenorhabditis elegans Nuclear hormo...    28   3.9  
Z68749-3|CAA92958.1|  288|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AL031637-1|CAA21047.2|  317|Caenorhabditis elegans Hypothetical ...    28   5.1  
AF244356-1|AAF70462.1|  288|Caenorhabditis elegans long chain po...    28   5.1  
AF039716-2|AAB96737.1|  462|Caenorhabditis elegans Hypothetical ...    27   6.7  

>Z68315-10|CAD59149.1|  109|Caenorhabditis elegans Hypothetical
           protein F28C6.7c protein.
          Length = 109

 Score = 89.0 bits (211), Expect = 2e-18
 Identities = 42/79 (53%), Positives = 58/79 (73%)
 Frame = -2

Query: 484 MKFNKQVTSSXRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 305
           MK N  V+S   K+RK HF+APSH RR +MS+PL+KELR K  ++++PIR DDEV V+RG
Sbjct: 1   MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRG 60

Query: 304 HYKGQQVGKVMQVYRKNLL 248
            +KG   G+V++ YRK  +
Sbjct: 61  RHKG-NTGRVLRCYRKKFV 78



 Score = 47.2 bits (107), Expect = 8e-06
 Identities = 18/27 (66%), Positives = 25/27 (92%)
 Frame = -1

Query: 257 KFVVYIERIQREKANGATAYVGIHPSK 177
           KFV++I++I REKANG+T ++GIHPSK
Sbjct: 76  KFVIHIDKITREKANGSTVHIGIHPSK 102


>Z68315-9|CAA92678.1|  106|Caenorhabditis elegans Hypothetical
           protein F28C6.7b protein.
          Length = 106

 Score = 89.0 bits (211), Expect = 2e-18
 Identities = 42/79 (53%), Positives = 58/79 (73%)
 Frame = -2

Query: 484 MKFNKQVTSSXRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 305
           MK N  V+S   K+RK HF+APSH RR +MS+PL+KELR K  ++++PIR DDEV V+RG
Sbjct: 1   MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRG 60

Query: 304 HYKGQQVGKVMQVYRKNLL 248
            +KG   G+V++ YRK  +
Sbjct: 61  RHKG-NTGRVLRCYRKKFV 78



 Score = 47.2 bits (107), Expect = 8e-06
 Identities = 18/27 (66%), Positives = 25/27 (92%)
 Frame = -1

Query: 257 KFVVYIERIQREKANGATAYVGIHPSK 177
           KFV++I++I REKANG+T ++GIHPSK
Sbjct: 76  KFVIHIDKITREKANGSTVHIGIHPSK 102


>Z68315-8|CAA92674.1|  142|Caenorhabditis elegans Hypothetical
           protein F28C6.7a protein.
          Length = 142

 Score = 89.0 bits (211), Expect = 2e-18
 Identities = 42/79 (53%), Positives = 58/79 (73%)
 Frame = -2

Query: 484 MKFNKQVTSSXRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 305
           MK N  V+S   K+RK HF+APSH RR +MS+PL+KELR K  ++++PIR DDEV V+RG
Sbjct: 1   MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRG 60

Query: 304 HYKGQQVGKVMQVYRKNLL 248
            +KG   G+V++ YRK  +
Sbjct: 61  RHKG-NTGRVLRCYRKKFV 78



 Score = 79.8 bits (188), Expect = 1e-15
 Identities = 34/61 (55%), Positives = 49/61 (80%)
 Frame = -1

Query: 257 KFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGKDKGK 78
           KFV++I++I REKANG+T ++GIHPSK  I KLK++KDR+A+++R+A GR    G  KGK
Sbjct: 76  KFVIHIDKITREKANGSTVHIGIHPSKVAITKLKLDKDRRALVERKAAGRSRVTGILKGK 135

Query: 77  Y 75
           +
Sbjct: 136 H 136


>AC006674-1|AAK68390.1|  388|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 119 protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 5   FKNFIYLKNYLFKRPPWLWQFPRCI 79
           F NF++LKN+L  +     +F +CI
Sbjct: 79  FSNFLFLKNFLIPKTSRFCRFKKCI 103


>Z68749-3|CAA92958.1|  288|Caenorhabditis elegans Hypothetical
           protein F56H11.4 protein.
          Length = 288

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 10/89 (11%)
 Frame = +2

Query: 212 HWPFLFESSQCIQQIFTIHL----------HHFANLLTFVVSTYNLNFIVFANRHGFYIE 361
           +W +LF +S+  + + TI L          H + ++LT + + Y+       NR+G Y+ 
Sbjct: 125 YWVWLFMASKLFELVDTIFLVLRKRPLMFLHWYHHILTMIYAWYSHPLTPGFNRYGIYLN 184

Query: 362 FLS*FLRQGRGHQHSPYM*RSTEMPLPVF 448
           F+           +S Y  RS ++ +P F
Sbjct: 185 FVV------HAFMYSYYFLRSMKIRVPGF 207


>AL031637-1|CAA21047.2|  317|Caenorhabditis elegans Hypothetical
           protein Y47H9B.2 protein.
          Length = 317

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = +2

Query: 41  KRPPWLWQFPRCIYPCLCQVQPVC 112
           ++ PW ++    +YP LC++  +C
Sbjct: 249 RKYPWYYKMSSAMYPALCELAGIC 272


>AF244356-1|AAF70462.1|  288|Caenorhabditis elegans long chain
           polyunsaturated fattyacid elongation enzyme protein.
          Length = 288

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 10/89 (11%)
 Frame = +2

Query: 212 HWPFLFESSQCIQQIFTIHL----------HHFANLLTFVVSTYNLNFIVFANRHGFYIE 361
           +W +LF +S+  + + TI L          H + ++LT + + Y+       NR+G Y+ 
Sbjct: 125 YWVWLFMASKLFELVDTIFLVLRKRPLMFLHWYHHILTMIYAWYSHPLTPGFNRYGIYLN 184

Query: 362 FLS*FLRQGRGHQHSPYM*RSTEMPLPVF 448
           F+           +S Y  RS ++ +P F
Sbjct: 185 FVV------HAFMYSYYFLRSMKIRVPGF 207


>AF039716-2|AAB96737.1|  462|Caenorhabditis elegans Hypothetical
           protein W03G9.3 protein.
          Length = 462

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/70 (21%), Positives = 28/70 (40%)
 Frame = -2

Query: 493 CDRMKFNKQVTSSXRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQV 314
           C      K++ S  R   K   ++P H++  + S  L  + +      +    K D +  
Sbjct: 306 CSSETLAKEIFSDTRLELKLELTSPVHMKMDVFSVKLEPQQKTVLPEPTKETPKTDALLT 365

Query: 313 VRGHYKGQQV 284
            R H KG+ +
Sbjct: 366 PRSHIKGRSM 375


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,723,807
Number of Sequences: 27780
Number of extensions: 240616
Number of successful extensions: 626
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)