Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1018.Seq
         (548 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g67510.1 68418.m08513 60S ribosomal protein L26 (RPL26B)           121   3e-28
At3g49910.1 68416.m05456 60S ribosomal protein L26 (RPL26A) 60S ...   116   1e-26
At4g35380.1 68417.m05026 guanine nucleotide exchange family prot...    28   3.6  
At3g04670.1 68416.m00500 WRKY family transcription factor simila...    28   3.6  
At1g28070.1 68414.m03436 expressed protein ; expression supporte...    28   4.7  
At4g02110.1 68417.m00282 BRCT domain-containing protein contains...    27   6.2  

>At5g67510.1 68418.m08513 60S ribosomal protein L26 (RPL26B)
          Length = 146

 Score =  121 bits (292), Expect = 3e-28
 Identities = 61/89 (68%), Positives = 75/89 (84%), Gaps = 1/89 (1%)
 Frame = -2

Query: 484 MKFNKQVTSSXRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 305
           MKFN +V+SS RKNRK HF+APS +RRVLMSSPLSK+LR K NV+SMPIRKDDEVQVVRG
Sbjct: 1   MKFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRG 60

Query: 304 HYKGQQVGKVMQVYRKN-LLYTLRGFKEK 221
            +KG++ GKVMQVYR+  +++  R  +EK
Sbjct: 61  TFKGRE-GKVMQVYRRKWVIHIERITREK 88



 Score = 69.7 bits (163), Expect = 1e-12
 Identities = 32/59 (54%), Positives = 47/59 (79%)
 Frame = -1

Query: 257 KFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGKDKG 81
           K+V++IERI REK NG+T  VG++ S  +I KL+++KDRK++L+R+A GR AA  K+KG
Sbjct: 76  KWVIHIERITREKVNGSTVNVGVNASNVMITKLRLDKDRKSLLERKANGR-AAADKEKG 133


>At3g49910.1 68416.m05456 60S ribosomal protein L26 (RPL26A) 60S
           RIBOSOMAL PROTEIN L26, Brassica rapa, EMBL:BRD495
          Length = 146

 Score =  116 bits (279), Expect = 1e-26
 Identities = 58/89 (65%), Positives = 74/89 (83%), Gaps = 1/89 (1%)
 Frame = -2

Query: 484 MKFNKQVTSSXRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 305
           MK+N +VTSS RKNRK HF+A S  RRV+MSSPLS +LRQK+NV+SMPIRKDDEVQ+VRG
Sbjct: 1   MKYNPRVTSSRRKNRKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRG 60

Query: 304 HYKGQQVGKVMQVYRKN-LLYTLRGFKEK 221
            YKG++ GKV+QVYR+  +++  R  +EK
Sbjct: 61  TYKGRE-GKVVQVYRRKWVIHIERITREK 88



 Score = 77.8 bits (183), Expect = 4e-15
 Identities = 37/59 (62%), Positives = 48/59 (81%)
 Frame = -1

Query: 257 KFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGKDKG 81
           K+V++IERI REK NG T  VGI PSK VI KL+++KDRK++L+R+AKGR AA  K+KG
Sbjct: 76  KWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLERKAKGR-AAADKEKG 133


>At4g35380.1 68417.m05026 guanine nucleotide exchange family protein
            similar to guanine nucleotide exchange factor [Homo
            sapiens] GI:5456754; contains Pfam profile PF01369: Sec7
            domain
          Length = 1706

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -3

Query: 459  PXEGKTGRGISVLLHI 412
            P +G TG GISVLLH+
Sbjct: 1408 PFQGSTGSGISVLLHL 1423


>At3g04670.1 68416.m00500 WRKY family transcription factor similar
           to elicitor response element binding protein WRKY3
           isolog GB:AAB63078 [Arabidopsis thaliana]
          Length = 330

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +3

Query: 360 NFCLSSLDRGEDI-NTRLICEGALKC 434
           +F L+ L RG D  +TR +C G+LKC
Sbjct: 203 SFHLTGLSRGSDQQHTRKMCSGSLKC 228


>At1g28070.1 68414.m03436 expressed protein ; expression supported
           by MPSS
          Length = 176

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -2

Query: 433 HFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGK 278
           HFS PSH+ + L     + E+  +     M +++D    + RG+Y  Q  G+
Sbjct: 47  HFSVPSHLEQCL--DLKTGEIYYRSWNSGMRVKEDPRKSMSRGNYADQSSGE 96


>At4g02110.1 68417.m00282 BRCT domain-containing protein contains
           Pfam domain, PF00533: BRCA1 C Terminus (BRCT) domain
          Length = 1293

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/53 (24%), Positives = 29/53 (54%)
 Frame = -2

Query: 481 KFNKQVTSSXRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDE 323
           K     ++S  ++ +RH S  ++ R+ L  SP +  L ++ + ++  +R DD+
Sbjct: 269 KMETDGSTSINRSIRRHSSLATYSRKTLQRSPETDTLGKESSGQNRSLRMDDK 321


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,976,227
Number of Sequences: 28952
Number of extensions: 219916
Number of successful extensions: 617
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)