Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1016.Seq
         (399 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   4.5  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   5.9  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    20   7.8  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -2

Query: 290  PVDDTLP-SRLSECIHKCCYR-RMYWIL*GLCLHQCYWNCRWMIHFHHDCWNCIHKCCY 120
            P+D TL  S+ +  I     + +++ ++   C ++C++  +  I     CWN +  C Y
Sbjct: 1080 PIDYTLVFSKFTSSIRMLLIQGQIFGLITFGCSNRCFFPSKIRI-----CWNVLLNCVY 1133


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = -1

Query: 372 EAXSISAATAGCTGSCQVCACISVTGT 292
           ++ ++  A+ G T     C C   TGT
Sbjct: 902 KSSALRPASGGTTARVVRCVCAGSTGT 928



 Score = 20.6 bits (41), Expect = 5.9
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = -3

Query: 259 RNVSISAATAGCTGSCKVCACISVTGT 179
           ++ ++  A+ G T     C C   TGT
Sbjct: 902 KSSALRPASGGTTARVVRCVCAGSTGT 928


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 4/15 (26%), Positives = 11/15 (73%)
 Frame = -2

Query: 173 WMIHFHHDCWNCIHK 129
           +M+H ++  W C+++
Sbjct: 152 FMLHCNNTTWRCLYR 166



 Score = 20.2 bits (40), Expect = 7.8
 Identities = 4/15 (26%), Positives = 11/15 (73%)
 Frame = -2

Query: 59  WMIHFHHDCWNCIHK 15
           +M+H ++  W C+++
Sbjct: 152 FMLHCNNTTWRCLYR 166


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,655
Number of Sequences: 336
Number of extensions: 1932
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8541369
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)