Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV1016.Seq
(399 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0482 + 22614097-22614729,22614859-22615182,22615291-226153... 31 0.25
10_01_0313 + 3447065-3448204 30 0.59
09_06_0354 - 22490833-22491417 30 0.59
12_01_0220 - 1657554-1657620,1657943-1658109,1658110-1658267,165... 29 1.4
02_05_1038 + 33691390-33691512,33691719-33691791,33693173-336933... 28 3.1
05_03_0384 - 13361999-13362120,13362241-13362252,13362921-133629... 27 4.1
05_03_0383 - 13352924-13353045,13353166-13353177,13353844-133539... 27 4.1
04_01_0216 - 2739742-2740381,2742346-2742883,2745014-2745911 27 4.1
01_07_0084 + 40976976-40977164,40978174-40978201,40978445-409785... 27 4.1
01_01_0071 + 548255-548399,548478-548651,548787-548892,548992-54... 27 4.1
04_04_0189 + 23438794-23439053,23439178-23439400,23439947-23440819 27 5.5
07_01_0389 - 2915191-2915604,2915696-2915752,2915867-2915922,291... 27 7.2
06_03_1511 - 30669292-30669401,30669894-30669930,30670012-306701... 27 7.2
05_07_0165 + 28107093-28108457 27 7.2
04_01_0528 - 6917414-6919849 27 7.2
02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949 27 7.2
02_05_0630 + 30486157-30486675 26 9.5
>01_05_0482 +
22614097-22614729,22614859-22615182,22615291-22615396,
22615628-22615668
Length = 367
Score = 31.5 bits (68), Expect = 0.25
Identities = 21/49 (42%), Positives = 25/49 (51%)
Frame = +3
Query: 6 VAALMDTVPTVVMEVYHPPAVPVTLIQTQTARDPVHPVVAALMDTVPTV 152
VAA + P V+ P A +TLI A DP+ VVA MD V TV
Sbjct: 6 VAAALAPAPATA-PVFSPAAAGLTLIAAAAA-DPIAAVVAGAMDGVVTV 52
>10_01_0313 + 3447065-3448204
Length = 379
Score = 30.3 bits (65), Expect = 0.59
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = -2
Query: 392 HFHHHSRKLXXXXXXXXXXXXPARSVLASVLLELPVD-DTLPSRLSEC 252
H HHH R+L +L +LL LP D TLP+ + C
Sbjct: 8 HHHHHRRRLPSTAPSPSPSPLDDDDLLQEILLRLPPDASTLPTASAVC 55
>09_06_0354 - 22490833-22491417
Length = 194
Score = 30.3 bits (65), Expect = 0.59
Identities = 20/57 (35%), Positives = 25/57 (43%)
Frame = +3
Query: 72 VTLIQTQTARDPVHPVVAALMDTVPTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAA 242
V + T TA + P V +D T PP VP+ Q+Q QDP P AA
Sbjct: 28 VVQLTTTTAELELEPTVTVQVDDNKTGAAADETPPVVPL---QSQETQDPNEPKAAA 81
>12_01_0220 -
1657554-1657620,1657943-1658109,1658110-1658267,
1658362-1658447,1658559-1658808,1659194-1660320,
1662207-1662351,1663555-1663696,1663775-1663828,
1663914-1663985,1664710-1664778,1664885-1664926,
1665024-1665092,1665257-1665394,1665518-1665628,
1665704-1665836,1666834-1666889,1667191-1667901
Length = 1198
Score = 29.1 bits (62), Expect = 1.4
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = +3
Query: 54 HPPAVPVTLIQTQTARDPVHPVVAALMDTVPTVVMEVYHPPAVPVTLMQAQTL 212
H P P+ L+ + R P+ + +L V+++YH V L A TL
Sbjct: 581 HSPPSPILLLLVEGVRVPLPRTIRSLALVAMITVVDLYHVLTAVVPLYVAMTL 633
>02_05_1038 +
33691390-33691512,33691719-33691791,33693173-33693303,
33693500-33693526
Length = 117
Score = 27.9 bits (59), Expect = 3.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 283 MIHFHHDCRNVSISAATAGCT 221
+IH H+DCRN S + GCT
Sbjct: 93 IIH-HYDCRNTSTNVLLQGCT 112
>05_03_0384 -
13361999-13362120,13362241-13362252,13362921-13362981,
13363049-13363202,13364653-13364788,13365020-13365290,
13365654-13365962
Length = 354
Score = 27.5 bits (58), Expect = 4.1
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +2
Query: 266 VMEVYHPPAVPVTLMQAQTWQDPVH 340
+ E++HP + L+ A W DP+H
Sbjct: 241 ITELHHPIKKVMNLVTASKWSDPLH 265
>05_03_0383 -
13352924-13353045,13353166-13353177,13353844-13353904,
13353972-13354125,13355576-13355711,13355943-13356138
Length = 226
Score = 27.5 bits (58), Expect = 4.1
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +2
Query: 266 VMEVYHPPAVPVTLMQAQTWQDPVH 340
+ E++HP + L+ A W DP+H
Sbjct: 113 ITELHHPIKKVMNLVTASKWSDPLH 137
>04_01_0216 - 2739742-2740381,2742346-2742883,2745014-2745911
Length = 691
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -1
Query: 387 PSPQSEAXSISAATAGCTGSCQV 319
P PQ A SAATAGC CQ+
Sbjct: 264 PGPQV-AVGFSAATAGCVEICQI 285
>01_07_0084 + 40976976-40977164,40978174-40978201,40978445-40978575,
40978941-40979434,40979516-40979609,40979686-40979779,
40980342-40980444,40980550-40980601,40980716-40980756,
40980881-40980960,40981490-40981936,40982378-40982554,
40983205-40983803,40983886-40985040
Length = 1227
Score = 27.5 bits (58), Expect = 4.1
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Frame = +3
Query: 18 MDTVPTVVMEVYHPPAVPVTLIQTQTARDPVHPVVAALMDTVPTVVMEVYHPPAVPVTLM 197
M ++P ++ V +P V + +R VH + T V + V+H PAV
Sbjct: 907 MTSLPQSMISV-NPSTQHVAPMNNLLSRATVHQHTQSYALTSDPVAVAVHHQPAVNKLAH 965
Query: 198 QAQTLQDPV--HPAVAALMDTFRQS*WK 275
+ Q++ P H +VA ++ W+
Sbjct: 966 EVQSISHPAVSHSSVAESHASYTSYTWQ 993
>01_01_0071 +
548255-548399,548478-548651,548787-548892,548992-549130,
549216-549293,549395-549460,550061-550201,550417-550527,
550614-550655,550739-550825,551033-551118,551681-551684
Length = 392
Score = 27.5 bits (58), Expect = 4.1
Identities = 21/71 (29%), Positives = 31/71 (43%)
Frame = +3
Query: 30 PTVVMEVYHPPAVPVTLIQTQTARDPVHPVVAALMDTVPTVVMEVYHPPAVPVTLMQAQT 209
P +V EV+ + L Q AR + A L DTVP + + ++ AQT
Sbjct: 58 PALVQEVFMGNVLSANLGQAP-ARQAA--LGAGLPDTVPCTTVNKVCSSGMKAVMLAAQT 114
Query: 210 LQDPVHPAVAA 242
+Q +H V A
Sbjct: 115 IQLGMHDVVVA 125
>04_04_0189 + 23438794-23439053,23439178-23439400,23439947-23440819
Length = 451
Score = 27.1 bits (57), Expect = 5.5
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Frame = +3
Query: 60 PAVPVTLIQTQTARD-PVHPVVAALMDTVPTVVME--VYHPPA 179
P+ + T RD P+ P AA DT+P + +HPPA
Sbjct: 22 PSNTTVTLPPLTLRDVPLLPSAAAATDTIPNPISRHPYFHPPA 64
>07_01_0389 -
2915191-2915604,2915696-2915752,2915867-2915922,
2916053-2916113,2916243-2916365,2916505-2916537,
2916617-2916709,2916839-2916934,2917025-2917203,
2917344-2917530,2918051-2918184,2918311-2918518,
2918598-2918633,2918785-2919241,2919633-2919736,
2920489-2920569,2920646-2920697,2920837-2920876,
2920991-2921085,2921241-2921383,2921899-2922006,
2922120-2922221,2922302-2922348,2922425-2922554,
2923173-2923304,2923404-2923616,2923709-2923963,
2924053-2924799
Length = 1460
Score = 26.6 bits (56), Expect = 7.2
Identities = 18/65 (27%), Positives = 28/65 (43%)
Frame = +3
Query: 57 PPAVPVTLIQTQTARDPVHPVVAALMDTVPTVVMEVYHPPAVPVTLMQAQTLQDPVHPAV 236
P A ++ V A L + T+++ ++ PPA+P L A L + A
Sbjct: 26 PRATRTATPDDASSSSAVDDAAALLAEAGCTLLVPLHQPPALPSPLSFAPRLARALAAAD 85
Query: 237 AALMD 251
AAL D
Sbjct: 86 AALRD 90
>06_03_1511 -
30669292-30669401,30669894-30669930,30670012-30670107,
30670186-30670281,30670679-30670828,30670956-30671100,
30671178-30671251,30671325-30671445,30671697-30671821,
30671898-30672047,30672249-30672324,30672496-30672557,
30672597-30672839,30673354-30673683,30673776-30673932,
30674008-30674139,30674219-30674277,30674734-30674798,
30674878-30675094,30675413-30675499,30675655-30675750,
30675938-30676003,30676096-30676287,30676380-30676532,
30676812-30677052,30677322-30677515,30678212-30678348,
30678474-30678480,30678708-30678830,30679370-30679427,
30680018-30680090,30680493-30681765
Length = 1714
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +3
Query: 57 PPAVPVTLIQTQTARDPVHPVVAALMDTVPTVVMEVY 167
PPA+ V + T R P+H ++A L P + Y
Sbjct: 60 PPALDVCTLSFPTKRQPIHRLLARLAPADPDTFLLDY 96
>05_07_0165 + 28107093-28108457
Length = 454
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -1
Query: 393 TLPSPQSEAXSISAATAGCTGSCQVCACISVTG 295
TL S +S+ S +AGCT + ++C CI+ G
Sbjct: 422 TLRSQKSQKCRPSPTSAGCTNAKRIC-CINPRG 453
>04_01_0528 - 6917414-6919849
Length = 811
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -2
Query: 320 SVLASVLLELPVDDTLPSRLSECIHKCCYRRMYWIL 213
S+ A+VLL++P PS +S K + YWIL
Sbjct: 426 SLQATVLLKVPRSTNSPSMISSGSSKWKKDKKYWIL 461
>02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949
Length = 550
Score = 26.6 bits (56), Expect = 7.2
Identities = 21/81 (25%), Positives = 37/81 (45%)
Frame = +3
Query: 9 AALMDTVPTVVMEVYHPPAVPVTLIQTQTARDPVHPVVAALMDTVPTVVMEVYHPPAVPV 188
A + + T +EV H A+P+ L + RD + V + + + V+ Y P+
Sbjct: 128 ADALHRLATRAVEVLHAMAIPIEL----SDRDSL---VKSASTALNSKVVSQYSSLLSPL 180
Query: 189 TLMQAQTLQDPVHPAVAALMD 251
+ A ++ DP HP + L D
Sbjct: 181 AVDAALSVVDPAHPDLLDLRD 201
>02_05_0630 + 30486157-30486675
Length = 172
Score = 26.2 bits (55), Expect = 9.5
Identities = 9/36 (25%), Positives = 16/36 (44%)
Frame = -3
Query: 313 LHQCYWNCRWMIHFHHDCRNVSISAATAGCTGSCKV 206
++ C W+C W F ++ ++A SC V
Sbjct: 95 MYACMWHCGWPAEFKYNAVVHDVAAVDLAAYRSCTV 130
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,885,292
Number of Sequences: 37544
Number of extensions: 203088
Number of successful extensions: 659
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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