Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV1016.Seq
(399 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49209| Best HMM Match : Vicilin_N (HMM E-Value=0.23) 36 0.012
SB_39684| Best HMM Match : Tom7 (HMM E-Value=5.1) 33 0.11
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) 32 0.15
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011) 31 0.46
SB_42244| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.46
SB_27470| Best HMM Match : Baculo_PEP_C (HMM E-Value=2.8) 30 0.80
SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.4
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.4
SB_30469| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.4
SB_43281| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.2
SB_21618| Best HMM Match : Yip1 (HMM E-Value=1.1) 28 3.2
SB_11116| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.2
SB_55679| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.3
SB_13864| Best HMM Match : FtsX (HMM E-Value=1.6) 27 4.3
SB_29757| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_44970| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 27 5.6
SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09) 27 7.4
SB_19226| Best HMM Match : I-set (HMM E-Value=0) 26 9.8
SB_15415| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.8
SB_43984| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.8
SB_16535| Best HMM Match : ShTK (HMM E-Value=2.2e-18) 26 9.8
SB_6588| Best HMM Match : 7tm_1 (HMM E-Value=0) 26 9.8
SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18) 26 9.8
>SB_49209| Best HMM Match : Vicilin_N (HMM E-Value=0.23)
Length = 197
Score = 35.9 bits (79), Expect = 0.012
Identities = 17/63 (26%), Positives = 24/63 (38%)
Frame = -2
Query: 200 LHQCYWNCRWMIHFHHDCWNCIHKCCYHRMYWIPRCLSLNQCYWNCRWMIHFHHDCWNCI 21
+H C CRW + D C C + + R ++ C CRW I+ D C
Sbjct: 125 IHTCKSTCRWRLDRQADIHTCKSTCRWR----LDRQADIHTCKSTCRWRINRQADIHRCK 180
Query: 20 HKC 12
C
Sbjct: 181 STC 183
Score = 34.3 bits (75), Expect = 0.037
Identities = 16/63 (25%), Positives = 23/63 (36%)
Frame = -2
Query: 200 LHQCYWNCRWMIHFHHDCWNCIHKCCYHRMYWIPRCLSLNQCYWNCRWMIHFHHDCWNCI 21
+H C CRW + D C C + + R ++ C CRW + D C
Sbjct: 91 IHTCKSTCRWRLDRQADIHTCKSTCRWR----LDRQADIHTCKSTCRWRLDRQADIHTCK 146
Query: 20 HKC 12
C
Sbjct: 147 STC 149
Score = 31.9 bits (69), Expect = 0.20
Identities = 14/50 (28%), Positives = 21/50 (42%)
Frame = -2
Query: 200 LHQCYWNCRWMIHFHHDCWNCIHKCCYHRMYWIPRCLSLNQCYWNCRWMI 51
+H C CRW + D C C + I R +++C CRW +
Sbjct: 142 IHTCKSTCRWRLDRQADIHTCKSTCRWR----INRQADIHRCKSTCRWQL 187
Score = 31.5 bits (68), Expect = 0.26
Identities = 15/63 (23%), Positives = 22/63 (34%)
Frame = -2
Query: 200 LHQCYWNCRWMIHFHHDCWNCIHKCCYHRMYWIPRCLSLNQCYWNCRWMIHFHHDCWNCI 21
+H C C W + D C C + + R ++ C CRW + D C
Sbjct: 74 IHTCKSTCPWRLDRQADIHTCKSTCRWR----LDRQADIHTCKSTCRWRLDRQADIHTCK 129
Query: 20 HKC 12
C
Sbjct: 130 STC 132
>SB_39684| Best HMM Match : Tom7 (HMM E-Value=5.1)
Length = 424
Score = 32.7 bits (71), Expect = 0.11
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Frame = +3
Query: 3 VVAALMDTVP-TVVMEVYHPPAVPVTLIQTQTARDPVH-PVVAALMDTVPTVVMEVYHPP 176
V+ ++DT T V H P V VTL++ +A + VH P+V L+ V V H P
Sbjct: 57 VLVKILDTGKVTSAKVVVHIPLV-VTLLKATSAEEVVHIPLVVTLLKVTSAKV--VVHIP 113
Query: 177 AVPVTLMQAQTLQDPVH-PAVAALM 248
V VTL++ + + VH P V L+
Sbjct: 114 LV-VTLVEVTSAKVMVHIPLVVTLV 137
Score = 26.6 bits (56), Expect = 7.4
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +3
Query: 114 PVVAALMDTVP-TVVMEVYHPPAVPVTLMQAQTLQDPVH-PAVAALM 248
PV+ ++DT T V H P V VTL++A + ++ VH P V L+
Sbjct: 56 PVLVKILDTGKVTSAKVVVHIPLV-VTLLKATSAEEVVHIPLVVTLL 101
>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
Length = 612
Score = 32.3 bits (70), Expect = 0.15
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -2
Query: 158 HHDCWNCIHKCCY-HRMYWIPRCLSLNQCYWNCRWMIHFHHDCWNCIHKCCY 6
H+ C+ H CCY H Y C + Y C + H+H+ C+ + CY
Sbjct: 13 HNRCYRHHHYCCYCHHRY----CYYRHHHY--CWYRHHYHYPCYRHYYHRCY 58
Score = 31.1 bits (67), Expect = 0.35
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Frame = -2
Query: 248 HKCCYRRMYWIL*GLCLHQ-CYWN----CRWMIHFHHDCWNCIHKCCYHRMY 108
H CYR ++ C H+ CY+ C + H+H+ C+ + CY Y
Sbjct: 13 HNRCYRHHHYCC--YCHHRYCYYRHHHYCWYRHHYHYPCYRHYYHRCYRHHY 62
Score = 30.7 bits (66), Expect = 0.46
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Frame = -2
Query: 248 HKCCY---RRMYWIL*GLCLHQCYWNCRWMIHFHHDCWNCIHKCCY-HRMYWI 102
H CCY R Y+ C ++ +++ H++H C+ H CCY HR +I
Sbjct: 21 HYCCYCHHRYCYYRHHHYCWYRHHYHYPCYRHYYHRCYR-HHYCCYRHRHNFI 72
>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
Length = 972
Score = 30.7 bits (66), Expect = 0.46
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = -2
Query: 149 CWNCIHKCCYHRMYWIPRCLSLNQCYWNCRWMIHFHHDCWNCIHKCC 9
C+ + CY+ Y+ C CY+ C ++HH + C + CC
Sbjct: 476 CYYYCYCYCYYYCYYYCYCYCYYCCYY-CYCYYYYHH--YYCCYYCC 519
Score = 29.5 bits (63), Expect = 1.1
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Frame = -2
Query: 254 CIHKC---CYRRMYWIL*GLCLHQCYWNCRWMIHFHHDCWNCIHKCC 123
C + C CY Y+ C + CY+ C ++HH + C + CC
Sbjct: 476 CYYYCYCYCYYYCYYYCYCYCYYCCYY-CYCYYYYHH--YYCCYYCC 519
Score = 27.9 bits (59), Expect = 3.2
Identities = 13/49 (26%), Positives = 20/49 (40%)
Frame = -2
Query: 239 CYRRMYWIL*GLCLHQCYWNCRWMIHFHHDCWNCIHKCCYHRMYWIPRC 93
CY Y+ C + CY+ C + ++ C+ C YH Y C
Sbjct: 472 CYCYCYYYCYCYCYYYCYYYC--YCYCYYCCYYCYCYYYYHHYYCCYYC 518
>SB_42244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 870
Score = 30.7 bits (66), Expect = 0.46
Identities = 19/83 (22%), Positives = 29/83 (34%)
Frame = +3
Query: 15 LMDTVPTVVMEVYHPPAVPVTLIQTQTARDPVHPVVAALMDTVPTVVMEVYHPPAVPVTL 194
+ D P++V ++ P A HP+ A P+ V H PA P L
Sbjct: 243 IRDVRPSLVTDLARHAGSPHVSATPTAAGVSAHPIPVATSKVPPSGVSSAPHKPAQPGLL 302
Query: 195 MQAQTLQDPVHPAVAALMDTFRQ 263
P+H +A + Q
Sbjct: 303 AHFSQTHSPLHMPTSAAAGSIAQ 325
>SB_27470| Best HMM Match : Baculo_PEP_C (HMM E-Value=2.8)
Length = 627
Score = 29.9 bits (64), Expect = 0.80
Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Frame = +3
Query: 6 VAALMDTVPTVVMEVYHPPAVPVTLIQTQTARDPVHPVVAALMDTVPTVVMEVYHPPAVP 185
V +DT+P VV + P V L R P V +DT+P VV + P V
Sbjct: 240 VVTRLDTLPRVVTRLDTLPRVVTRLDTLPRTRLDTLPRVVTRLDTLPRVVTRLDTLPRVV 299
Query: 186 V---TLMQAQTLQDPVHPAVAALMDT 254
TL + T D + P + +DT
Sbjct: 300 TCLDTLPRVGTRLDTL-PRIVTRLDT 324
>SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1128
Score = 28.3 bits (60), Expect = 2.4
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -2
Query: 113 MYWIPRCLSLNQCYWNCRWMIHFHHDCWNCIHKCC 9
M + C N C +NC H+ + +C HKCC
Sbjct: 311 MQYYRGCAFANHCDFNC---THYINGSSDCNHKCC 342
>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2834
Score = 28.3 bits (60), Expect = 2.4
Identities = 25/78 (32%), Positives = 30/78 (38%), Gaps = 9/78 (11%)
Frame = +3
Query: 27 VPTVVMEVYHPPAV--PVTLIQTQTARDPVHPVVAALMDTVPTVVMEVYHPPAV----PV 188
+PT Y P A VT ARDPV P V T + + HP + V
Sbjct: 1143 IPTTKFPPYVPRAERQTVTTAVPVVARDPVSPAVTQRPITTMSTTVVTQHPASTITTPAV 1202
Query: 189 TLMQAQTLQDPV---HPA 233
T A T+ P HPA
Sbjct: 1203 TQHPASTITTPAVTQHPA 1220
>SB_30469| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 645
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +3
Query: 27 VPTVVMEVYHPPAVPVTLIQTQTARDPVH--PVVAALMDTVPTVVMEVYHPPAVPVTLMQ 200
VP++ V P++ ++ Q ++ + V P + L+ VP++ V H P++ ++ Q
Sbjct: 289 VPSIKTSVTQVPSIKTSVTQFRSIKTLVTQVPSIKTLVTQVPSIKTSVTHVPSIKTSVTQ 348
>SB_43281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 169
Score = 27.9 bits (59), Expect = 3.2
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +3
Query: 42 MEVYHPPAVPVTLIQT-QTARD-PVHPVVAALMDTVP 146
ME P + + +T +TA D PVHP+ MDT+P
Sbjct: 1 MEESEQPKIASEVEETPETASDLPVHPLAPVSMDTIP 37
>SB_21618| Best HMM Match : Yip1 (HMM E-Value=1.1)
Length = 338
Score = 27.9 bits (59), Expect = 3.2
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 7/83 (8%)
Frame = +3
Query: 30 PTVVMEVYHPPAVPV-------TLIQTQTARDPVHPVVAALMDTVPTVVMEVYHPPAVPV 188
P V E++HPP V V L T +PVH ++ + +V H A V
Sbjct: 5 PIVAPEIHHPPQVVVHTPYEQQQLTPVHTPLEPVHTSSKSVHTSPQSVHTSQVHNAAQQV 64
Query: 189 TLMQAQTLQDPVHPAVAALMDTF 257
+AQ + +P VA + F
Sbjct: 65 N-NEAQPVHIQTYPVVAPQVPVF 86
Score = 26.6 bits (56), Expect = 7.4
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +2
Query: 257 PTVVMEVYHPPAVPVTLMQAQTWQDPVH 340
P V E++HPP V V Q PVH
Sbjct: 5 PIVAPEIHHPPQVVVHTPYEQQQLTPVH 32
>SB_11116| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1661
Score = 27.9 bits (59), Expect = 3.2
Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 3/56 (5%)
Frame = -2
Query: 182 NCRWMIHFHHDCWNCIHKCCYHRMYWIPR---CLSLNQCYWNCRWMIHFHHDCWNC 24
NC H DC + H+ HR IPR C N+ R + H C C
Sbjct: 562 NCGRPFHRSEDCPSGQHRLATHRSPRIPRNNVCFDFNRVTGCSRQACIYPHVCQKC 617
>SB_55679| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 203
Score = 27.5 bits (58), Expect = 4.3
Identities = 17/70 (24%), Positives = 26/70 (37%)
Frame = +3
Query: 18 MDTVPTVVMEVYHPPAVPVTLIQTQTARDPVHPVVAALMDTVPTVVMEVYHPPAVPVTLM 197
+ T P + + PP + Q PVH + T+P + + PP +
Sbjct: 64 LSTTPYYIQSISVPPLTTSSPSQYHPLLHPVH------LSTIPYYIQSISVPPLTTSSPS 117
Query: 198 QAQTLQDPVH 227
Q L PVH
Sbjct: 118 QYHPLLHPVH 127
>SB_13864| Best HMM Match : FtsX (HMM E-Value=1.6)
Length = 269
Score = 27.5 bits (58), Expect = 4.3
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = -3
Query: 244 SAATAGCTGSCKVCACISVTGTAXXXXXXXXXXXXXXXSAATTGCTGSRAV*V*ISVTGT 65
+AATA TG+ A ++ T TA + ATT T + ++VT T
Sbjct: 150 AAATATATGTTTATATVTATATATVTAAATATATATATATATTTSTATVTATATVTVTAT 209
Query: 64 A 62
A
Sbjct: 210 A 210
>SB_29757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 300
Score = 27.1 bits (57), Expect = 5.6
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Frame = -2
Query: 257 ECIHKCCYRRMYWIL*GLCLHQCYWNCRWMIHFHHDCWNCIHKCCYHRMYWIPRCLS-LN 81
+C +K + + + CLH Y C +H ++C + +H C H +Y CL L+
Sbjct: 105 DCANKNVHISICTVFLKECLHMLY-AC---VHVLYECLHVLH-ACLHVLY---ACLHVLH 156
Query: 80 QCYWNCRWMIHFHHDCWNCIHKC 12
C +H + C ++ C
Sbjct: 157 ACLHVLYACLHVLYACLRVLYAC 179
>SB_44970| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 506
Score = 27.1 bits (57), Expect = 5.6
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -3
Query: 277 HFHHDCRNVSISAATAGCTGSCKVCACI 194
H HD S++ AT G G+C+ C+
Sbjct: 370 HVMHDRPRNSVTMATNGIPGTCRTVTCL 397
>SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09)
Length = 1084
Score = 26.6 bits (56), Expect = 7.4
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = -2
Query: 203 CLHQCYWNCRWMIHFHHDCWNCIHKCC 123
C HQC C W HH+C + C
Sbjct: 424 CEHQCEELCAWKCR-HHECTKLCGEIC 449
>SB_19226| Best HMM Match : I-set (HMM E-Value=0)
Length = 1500
Score = 26.2 bits (55), Expect = 9.8
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = +3
Query: 3 VVAALMDTVPTVVMEVYHPPAVPVTLIQTQTARDPVHPVVAALMDTVPTVVMEVYHPPAV 182
VV+ ++ V VV+ V VPV ++ V VV ++ V V + V PAV
Sbjct: 1351 VVSVVVVVVSVVVVVVVVVVVVPVVVVVVSVVVVVVPVVVVVVVVVVVVVSIVVVSVPAV 1410
Query: 183 PVTLM 197
V L+
Sbjct: 1411 VVVLI 1415
>SB_15415| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1390
Score = 26.2 bits (55), Expect = 9.8
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = +3
Query: 3 VVAALMDTVPTVVMEVYHPPAVPVTLIQTQTARDPVHPVVAALMDTVPTVVMEVYHPPAV 182
VV+ ++ V VV+ V VPV ++ V VV ++ V V + V PAV
Sbjct: 366 VVSVVVVVVSVVVVVVVVVVVVPVVVVVVSVVVVVVPVVVVVVVVVVVVVSIVVVSVPAV 425
Query: 183 PVTLM 197
V L+
Sbjct: 426 VVVLI 430
>SB_43984| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 93
Score = 26.2 bits (55), Expect = 9.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -3
Query: 256 NVSISAATAGCTGSCKVCAC 197
+V++ A + GSCK CAC
Sbjct: 41 HVALLVAASAAVGSCKKCAC 60
>SB_16535| Best HMM Match : ShTK (HMM E-Value=2.2e-18)
Length = 101
Score = 26.2 bits (55), Expect = 9.8
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Frame = -2
Query: 194 QCYWNCRWMIHF-HHDCWNCIHKCCYHRMYWIPRCLSLNQCYWNCRWMIHFHHDCWNCIH 18
+C N +WM H+ C C+ C + + +C N R+M H +C +
Sbjct: 46 ECQRNTKWMFHYCPVSCGICV---CGDNNPECAKWATQGECSRNARFM---HQNCKRSCN 99
Query: 17 KC 12
KC
Sbjct: 100 KC 101
>SB_6588| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 355
Score = 26.2 bits (55), Expect = 9.8
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 197 HQCYWNCRWMIHFHHDCWNCIHKCCYHRMY 108
+Q Y +W H+ + C N I CC +R Y
Sbjct: 250 YQVYRAIKWT-HYLNSCLNPIIYCCLNRTY 278
>SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)
Length = 796
Score = 26.2 bits (55), Expect = 9.8
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -2
Query: 293 LPVDDTLPSRLSECIH 246
LP DD+LP R++E +H
Sbjct: 157 LPSDDSLPDRIAETLH 172
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,996,878
Number of Sequences: 59808
Number of extensions: 234260
Number of successful extensions: 1016
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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