Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV1016.Seq
         (399 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal...    24   1.8  
AY135184-1|AAN17505.1| 1009|Anopheles gambiae laccase 1 protein.       23   4.1  
AF080566-1|AAC31946.1|  308|Anopheles gambiae abdominal-A homeot...    22   7.2  
AY330181-1|AAQ16287.1|  156|Anopheles gambiae odorant-binding pr...    22   9.5  
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    22   9.5  

>AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal
           growth factor receptorprotein.
          Length = 1433

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 9/45 (20%)
 Frame = -3

Query: 319 LCL--HQCYWNCRWMIHFHHDCRNVSI-------SAATAGCTGSC 212
           +CL  HQ    C  +   HH+CRN+ +       +A T  C  +C
Sbjct: 684 ICLPCHQECRGCHGLGDDHHECRNLKLFEGDPYDNATTFTCVSNC 728


>AY135184-1|AAN17505.1| 1009|Anopheles gambiae laccase 1 protein.
          Length = 1009

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 11/41 (26%), Positives = 17/41 (41%)
 Frame = +3

Query: 69  PVTLIQTQTARDPVHPVVAALMDTVPTVVMEVYHPPAVPVT 191
           P+T   T T    + P     ++   T +ME      VP+T
Sbjct: 506 PLTTTTTSTEEPALEPETIMAVEPESTTLMEELPTTTVPIT 546


>AF080566-1|AAC31946.1|  308|Anopheles gambiae abdominal-A homeotic
           protein protein.
          Length = 308

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 372 EAXSISAATAGCTGSCQVCACISVTGTAGG 283
           +A ++SAA+AG        AC  ++ + GG
Sbjct: 58  QAAAVSAASAGVGVDSLGSACSQLSSSVGG 87


>AY330181-1|AAQ16287.1|  156|Anopheles gambiae odorant-binding
           protein AgamOBP55 protein.
          Length = 156

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 5/8 (62%), Positives = 8/8 (100%)
 Frame = -3

Query: 319 LCLHQCYW 296
           +C+HQCY+
Sbjct: 60  MCIHQCYY 67



 Score = 21.8 bits (44), Expect = 9.5
 Identities = 5/8 (62%), Positives = 8/8 (100%)
 Frame = -2

Query: 206 LCLHQCYW 183
           +C+HQCY+
Sbjct: 60  MCIHQCYY 67


>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1201

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
 Frame = -2

Query: 137 IHKCCYHRMY-WIPRCLSLNQCYWNCRWMIHFHHD 36
           +HK  +H MY W P    L       R  +   HD
Sbjct: 355 LHKSPHHDMYWWTPAIKRLRDDCLAARERVQLSHD 389


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 391,342
Number of Sequences: 2352
Number of extensions: 7399
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 31639662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)